Pairwise Alignments

Query, 577 a.a., ssDNA exonuclease, 5' --> 3'-specific (NCBI) from Escherichia coli BW25113

Subject, 589 a.a., single-stranded-DNA-specific exonuclease RecJ from Echinicola vietnamensis KMM 6221, DSM 17526

 Score =  266 bits (679), Expect = 2e-75
 Identities = 183/578 (31%), Positives = 295/578 (51%), Gaps = 45/578 (7%)

Query: 24  PLLRRLYASRGVRSAQELERSVKGMLPWQQ----LSGVEKAVEILYNAFREGTRIIVVGD 79
           P L  L A+R V S QE +   +  L        +  ++KAV+ L  A  +  +I+V GD
Sbjct: 27  PTLANLLANRKVTSFQEAKDFFRPDLDKIHSPFLMKDMDKAVDRLVQAIEQEEKILVYGD 86

Query: 80  FDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTVDNG 139
           +D DG T+ AL    + S+   ++D+ +P+R+++GYG+S   V  A   G +LIV++D G
Sbjct: 87  YDVDGTTAVALFYGFLSSV-YPHVDFYIPDRYQEGYGVSERGVRYAAENGFRLIVSLDCG 145

Query: 140 ISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNFPSKSLAGVGVAFYLM 199
           I +   V  A SLG+  I+ DHH PGD LP A A+++P  +DC +P K L+G GV F L+
Sbjct: 146 IKAIEKVALANSLGVDFIICDHHTPGDELPHALAVLDPKRKDCTYPYKELSGCGVGFKLI 205

Query: 200 LALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRIRAGK 259
                    Q + ++      +L  LLDLVA+   AD+VP+   NRIL   G+ R+    
Sbjct: 206 ---------QAFTEKTGKNASHLFGLLDLVAVSIAADIVPITGENRILAHYGLERLN-NN 255

Query: 260 CRPGIKALL----------------EVANRDAQKLAA------SDLGFALGPRLNAAGRL 297
            RPG+ AL+                ++  R+  +L +      SD+ F +GPR+NA+GRL
Sbjct: 256 PRPGLMALILAGKGQRSLQELLENRQLLQREMLQLKSDKDIDISDIVFRIGPRINASGRL 315

Query: 298 DDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGG 357
           +     V LL+  +I +A   A  ++ +N  RK  ++ +  EA+ + E  +R +D     
Sbjct: 316 EHAKASVELLISQDIHDALRRAEVVEDVNAARKNFDENITKEAIQMIE--DREQDKPYKS 373

Query: 358 LAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDT 417
             +Y  +WH+GV+GI+ASR  E+++RP I    + +    GS RS+    + +A+     
Sbjct: 374 TVLYKEDWHKGVIGIVASRCIEQYYRPTIILTES-NNKATGSARSVYDFDIYEAISECSD 432

Query: 418 LYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEM 477
           L    + +FGGH  AAGL++E DK   FQ RF E+VT  +     +  +  D  L   ++
Sbjct: 433 L----LEQFGGHKYAAGLTMELDKVPAFQARFEEVVTRRIADIHTKPVLEVDDELELDQI 488

Query: 478 TMEVAQLLRDAGPWGQMFPEPLFDGHFRLLQQ-RLVGERHLKVMVEPVGGGPLLDGIAFN 536
             +   +LR   P+G    EP+F  +    Q  +++ ++HLK  +   G       IAF 
Sbjct: 489 NYKFYNILRQMAPFGPGNTEPIFCANQVYAQNIKVLKDKHLKFEIVQDGQVTSPVCIAFG 548

Query: 537 VDTALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNI 574
             T            +A+++  N FR   SLQ+ + +I
Sbjct: 549 FATYYEMLRSKMRFNIAFEVRENTFRNTSSLQLYVKDI 586