Pairwise Alignments

Query, 608 a.a., exonuclease V (RecBCD complex), alpha chain (NCBI) from Escherichia coli BW25113

Subject, 610 a.a., exodeoxyribonuclease V, alpha subunit from Pseudomonas sp. S08-1

 Score =  429 bits (1103), Expect = e-124
 Identities = 260/570 (45%), Positives = 349/570 (61%), Gaps = 17/570 (2%)

Query: 34  AVTLAAALLSHDAGEGHVCLPLSRLENNEASHPLLATCVSEIGELQNWEECLLASQAVSR 93
           AV   AAL S     G VCLPL+R+   +   P     +  + EL+     L  S  V+ 
Sbjct: 29  AVLACAALCSEALAGGDVCLPLARVAG-QRPWPEFDFVLPPLVELRTR---LQGSALVAG 84

Query: 94  GDEPTPMILCGDRLYLNRMWCNERTVA-RFFNEVNHAIEVDEALLAQTLDKLFPVSDEI- 151
                P+IL G+RLYL R    E+ +A +         EVDEA LA++L +LF  + +  
Sbjct: 85  PGAFAPLILEGERLYLARYQAYEQQLAAQLLARAADRPEVDEARLAESLARLFAFNQQQP 144

Query: 152 NWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAAR 211
           +WQ++AAA A+ RR++VISGGPGTGKTTTV +LLAAL++   G+R  I LAAPTGKAAAR
Sbjct: 145 DWQRLAAAQAVRRRLAVISGGPGTGKTTTVVRLLAALLEQPGGDRLAIGLAAPTGKAAAR 204

Query: 212 LTESLGKALRQLPLTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEA 271
           + E++  A   LPL DE K  +PE+A TLHRLLG++  S  +RH A  PL LDVLVVDEA
Sbjct: 205 MAEAIRNAKADLPLADELKTLLPEEARTLHRLLGSRGDSPAVRHDAARPLALDVLVVDEA 264

Query: 272 SMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSR 331
           SM+DL +M++L+ ALP  AR+I LGD+DQLA+VEAGAV  ++C     GF A  A +L R
Sbjct: 265 SMVDLALMAKLVAALPPQARLILLGDKDQLAAVEAGAVFAELC--EGRGFDAAAAAELQR 322

Query: 332 LTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFT 391
           +TG  VP  T   A  L D++ LL  S+RF  DSGIG+LA  IN GD      + ++   
Sbjct: 323 ITGQAVPVETPRSA--LGDAVVLLTHSHRFAGDSGIGELARRINGGDAAGTLNLLREGRA 380

Query: 392 DIEKRLLQSGEDYIAMLEEALAGYGRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFGV 451
           D+     Q+     A+LE    GY  YL   + + +P     AFN ++ L A REGP+GV
Sbjct: 381 DL---AWQAEPSQPALLERLEQGYRPYLQAAR-KGDPAEAFAAFNAFRALTAQREGPWGV 436

Query: 452 AGLNERIEQFMQQKRKIHRHPHSRWYEGRPVMIARNDSALGLFNGDIGIALDRGQGTRVW 511
           +G+NE +E   + KR+       RWY GR VM+ +ND ALGLFNGDIGI L    G RV+
Sbjct: 437 SGINEALE--ARIKRRYSLAERERWYPGRAVMVRQNDYALGLFNGDIGICLASEYGLRVY 494

Query: 512 FAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVT 571
           F   DG  ++  P+RLP H++ +AMTVHKSQGSEF    L LP   + ++TR L YT +T
Sbjct: 495 FEGEDG-FRAFAPARLPSHDSAFAMTVHKSQGSEFSEVLLALPESPSSLLTRALFYTGIT 553

Query: 572 RARRRLSLYADERILSAAIATRTERRSGLA 601
           RA+ ++ ++     LS A+  + ER +GLA
Sbjct: 554 RAKHKVEIWGLPARLSEAVNGKAERAAGLA 583