Pairwise Alignments

Query, 608 a.a., exonuclease V (RecBCD complex), alpha chain (NCBI) from Escherichia coli BW25113

Subject, 698 a.a., RecBCD enzyme subunit RecD from Pseudomonas sp. RS175

 Score =  421 bits (1082), Expect = e-122
 Identities = 284/670 (42%), Positives = 374/670 (55%), Gaps = 81/670 (12%)

Query: 3   LQKQLLEAVEHKQLRPLD---VQFALTVAGDEHPAVTLAAALLSHDAGEGHVCLPLSRLE 59
           L + L   VE   LR LD   V F   +A D+ P V LAAAL SH  G GHVCL L    
Sbjct: 30  LLRLLTRWVERGWLRALDKAFVAFLQELAPDDDPLVLLAAALTSHQLGHGHVCLDLYET- 88

Query: 60  NNEASHPLLATCVSEIGELQ-----------------NWEECLLASQAVSRGDEPT---- 98
                 P  A  +   G+LQ                  W   L +S+ V+   + +    
Sbjct: 89  ---LKEPDFALSLPPEGDLQAGAMLLPSQLLQTLDGAQWCRTLASSRLVALAADQSEEAR 145

Query: 99  --PMILCGDRLYLNRMWCNERTVARFFNEVNHAIEVDEALLAQTLDKLFPVS---DEINW 153
             P++L G RLYL R W  ER +     +     +     L + LD LF  +     I+W
Sbjct: 146 QRPLVLSGKRLYLRRYWSYERRIDEALRQRLAERDAAPDDLRERLDGLFGTAAGPGAIDW 205

Query: 154 QKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMA--DGERCRIRLAAPTGKAAAR 211
           QK+A A+A     S+++GGPGTGKTTTV +LLA L   A   G+  RIRLAAPTGKAAAR
Sbjct: 206 QKLACALATRGAFSIVTGGPGTGKTTTVVRLLALLQAPAVEAGKPLRIRLAAPTGKAAAR 265

Query: 212 LTESLGKALRQLPLTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEA 271
           LTES+ + +  L ++   ++RIP D +T+HRLLG++PG++  RHHAGN L LDVLVVDEA
Sbjct: 266 LTESISQQVLSLEVSAAVRERIPCDVTTVHRLLGSRPGTRHFRHHAGNRLPLDVLVVDEA 325

Query: 272 SMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQ-LS 330
           SMIDL MM+ L+DALP  AR++ LGD+DQLASVEAGAVLGD+C  A  G+   R R  L 
Sbjct: 326 SMIDLEMMANLLDALPAQARLVLLGDKDQLASVEAGAVLGDLCRDAEEGWYTPRTRAWLE 385

Query: 331 RLTGTHVPAG------TGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKT 384
            ++G ++          GT    L   + +L+ S RFG  SGIGQLA  +N+      + 
Sbjct: 386 SVSGENLATSDLQQDLDGTH--PLAQQVVMLRHSRRFGEGSGIGQLARWVNQQQAEKARQ 443

Query: 385 VFQ-QDFTDIEKRLLQSGED------YIAMLEEALAGYGRYLDLLQARAEPDL------- 430
           + Q + + D+    L+   D       +    E   GY  YL++L+ R  PD        
Sbjct: 444 LLQGKQYADLFSLALKGEHDDGLERLLLEGRTEGPQGYRHYLNVLRQR-RPDTSRPLDDH 502

Query: 431 --------IIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQKRKIHRHPHSRWYEGRPV 482
                   ++ AF+ +QLLCA+R+GP+GV GLN+RI   + + R I    H  WYEGRPV
Sbjct: 503 CWADWAREVLSAFDAFQLLCAVRKGPWGVEGLNQRITAALLKARLIDSDHH--WYEGRPV 560

Query: 483 MIARNDSALGLFNGDIGIAL--------DRG-QGTRVWFAMPD--GNIKSVQPSRLPEHE 531
           ++ RND  LGL NGDIGIAL        + G Q  RV F   D  G ++ V PSRL + E
Sbjct: 561 LMTRNDYGLGLMNGDIGIALRLPEREGPEAGKQVLRVAFPRNDGRGGVRFVLPSRLNDVE 620

Query: 532 TTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYADER-ILSAAI 590
           T +AMTVHKSQGSEF H ALILP    PV+T+ELVYTA+TRA++  SL      +   A+
Sbjct: 621 TVYAMTVHKSQGSEFTHTALILPDALNPVLTKELVYTAITRAKQWFSLIEPRAGVFEEAV 680

Query: 591 ATRTERRSGL 600
             + +R SGL
Sbjct: 681 RRKVKRLSGL 690