Pairwise Alignments

Query, 608 a.a., exonuclease V (RecBCD complex), alpha chain (NCBI) from Escherichia coli BW25113

Subject, 702 a.a., RecBCD enzyme subunit RecD from Pseudomonas sp. DMC3

 Score =  412 bits (1059), Expect = e-119
 Identities = 275/657 (41%), Positives = 366/657 (55%), Gaps = 71/657 (10%)

Query: 11  VEHKQLRPLD---VQFALTVAGDEHPAVTLAAALLSHDAGEGHVCLPLS---RLENNEAS 64
           VE   LR LD   V F   +  +  P V LAAAL SH  G GHVCL L    +  +   S
Sbjct: 38  VERGWLRALDRAFVAFLHELEPETDPLVLLAAALTSHQLGHGHVCLDLFETLKAPDFALS 97

Query: 65  HP----------LLATCVSEIGELQNWEECLLASQAVSRGDEPT------PMILCGDRLY 108
            P          LL + + E  +  +W + L +S  V+   +P+      P++L   RLY
Sbjct: 98  LPPEGDVQGGVLLLPSQLLETLDGAHWCKVLASSPLVALAADPSETAQTRPLVLSSKRLY 157

Query: 109 LNRMWCNERTVARFFNEVNHAIEVDEALLAQTLDKLFPVSDE---INWQKVAAAVALTRR 165
           L R W  ER +     +     E     L Q L+ LF  ++    I+WQK+A A+A    
Sbjct: 158 LRRYWTYERRIDAALRQRLMQQEPTPDDLPQRLNGLFGGAESAAVIDWQKLACALATRSA 217

Query: 166 ISVISGGPGTGKTTTVAKLLAALIQMA--DGERCRIRLAAPTGKAAARLTESLGKALRQL 223
            S+I+GGPGTGKTTTV +LLA L   A   G   RIRLAAPTGKAAARLTES+ + ++ L
Sbjct: 218 FSIITGGPGTGKTTTVVRLLALLQAPAVEAGHPLRIRLAAPTGKAAARLTESISQQVQSL 277

Query: 224 PLTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLI 283
            + +  +  IP D +T+HRLLG++PG++  RHHAGN L LDVLVVDEASMIDL MM+ L+
Sbjct: 278 QVAEAVRAAIPSDVTTVHRLLGSRPGTRHFRHHAGNRLPLDVLVVDEASMIDLEMMANLL 337

Query: 284 DALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGT 343
           DA+P HAR++ LGD+DQLASVEAGAVLGD+C  A  G+ + + RQ           G+G 
Sbjct: 338 DAMPAHARLVLLGDKDQLASVEAGAVLGDLCRDAEGGWYSPQTRQWLESVSGESLQGSGM 397

Query: 344 E-----AASLRDSLCLLQKSYRFGSDSGIGQLAAAINRG-DKTAVKTVFQQDFTDIEKRL 397
                    L   + +L+ S RFG  SGIGQLA  +N+     A + +    + D+    
Sbjct: 398 HEDRDGTHPLAQQVVMLRHSRRFGEGSGIGQLARRVNQQLADEARQLLAAGSYDDVYSLP 457

Query: 398 LQSGEDYIAMLEEAL--------AGYGRYLDLLQARAEPDL--------------IIQAF 435
           L+   D+   LE  L         GY  YL +L+ +  P                ++QAF
Sbjct: 458 LKGEHDH--KLERLLLEGHGNGPQGYRHYLSVLRDQRPPSTRPLEHSDWTDWAREVLQAF 515

Query: 436 NEYQLLCALREGPFGVAGLNERIEQFMQQKRKIHRHPHSRWYEGRPVMIARNDSALGLFN 495
           + +QLLCA+R+GP+GV GLN+RI   + + R I      +WYEGRPV++ RND  LGL N
Sbjct: 516 DTFQLLCAVRKGPWGVEGLNQRITAALLKARLI--ESDQQWYEGRPVLMTRNDYGLGLMN 573

Query: 496 GDIGIALDRGQG---------TRVWFAMPD--GNIKSVQPSRLPEHETTWAMTVHKSQGS 544
           GDIGIAL   +           RV F   D  G ++ V PSRL + ET +AMTVHKSQGS
Sbjct: 574 GDIGIALKLPEREGAEIGKTVLRVAFPRNDGEGGVRFVLPSRLNDVETVYAMTVHKSQGS 633

Query: 545 EFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYADER-ILSAAIATRTERRSGL 600
           EF H ALILP    PV+T+EL+YT +TRAR   +L      +   A+  + +R SGL
Sbjct: 634 EFAHTALILPDALNPVLTKELIYTGITRARYWFTLIEPRAGVFEEAVLRKVKRLSGL 690