Pairwise Alignments

Query, 608 a.a., exonuclease V (RecBCD complex), alpha chain (NCBI) from Escherichia coli BW25113

Subject, 733 a.a., Exodeoxyribonuclease V alpha chain from Alteromonas macleodii MIT1002

 Score =  230 bits (587), Expect = 1e-64
 Identities = 201/586 (34%), Positives = 279/586 (47%), Gaps = 99/586 (16%)

Query: 106 RLYLNRMWCNERTVARFFNEVNHAIEV---DEAL--LAQTLDKLFPV--SDEINWQKVAA 158
           +LY  R +  E+ VAR  N V  A      DEA   + Q    +FP   +D  +WQ++A 
Sbjct: 147 KLYSRRYYEFEQEVAR--NVVKRAALTPLSDEASEKVKQLWPAIFPTETTDRQDWQQIAV 204

Query: 159 AVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGK 218
           A +L +R  VI+GGPGTGKT TV +LL AL   A  E  +I LAAPTGKA  R+TES+  
Sbjct: 205 AKSLMQRFCVINGGPGTGKTYTVLRLLLAL--QACDENLKIVLAAPTGKAQQRMTESIMN 262

Query: 219 ALRQL--PLTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDL 276
           ++  L   L D     +P DA TLHRLLG +      + +  N L  DVL+VDEASM+DL
Sbjct: 263 SIDGLRGKLNDTVLNNVPTDAVTLHRLLGLREHGVSTKFNQHNQLAADVLIVDEASMVDL 322

Query: 277 PMMSRLIDALPDHARVIFLGDRDQLASVEAGAVL------GDICAYANAGF-TAERARQL 329
            +M+R++ ALPDHAR+ F+GD DQL +VE G VL      G  C   NA       +   
Sbjct: 323 ALMTRIVRALPDHARLYFIGDADQLPAVELGNVLEQLVSTGPACFDDNANVPNGTNSAHS 382

Query: 330 SRLTGTH--------VPAGTGTEAASLRDSLCLLQ-----KSY--------RFGSDSGIG 368
           S    +H        VP+      A+L   L LL      KSY        RF     + 
Sbjct: 383 SLSLNSHDDAFSLGGVPSSMRQHIATLCPHLPLLPVDEQAKSYVATLQAPQRFKGQ--VA 440

Query: 369 QLAAAINRGDKTAVKTVF--QQDFTDIEKRL-------LQSGEDYIAMLEEALAGYGRYL 419
           ++A AI RGD +   T    Q D  D    L       LQSG      L+ +    GR L
Sbjct: 441 KVATAIQRGDASGALTAINDQADANDESAGLGSNTASRLQSGVHLWPELQVS----GRDL 496

Query: 420 DLLQARA--------EPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQKRKIHRH 471
             L   +          +  +   N  + L  +R+G  GV GLN  +  F   K KI + 
Sbjct: 497 QQLAKESFLPIFDAGSAEEALNRLNVVRWLTPVRKGGMGVEGLNNLV--FDAIKHKIRKR 554

Query: 472 PHSRWYEGRPVMIARNDSALGLFNGDIGIALDRGQG-TRVWF---AMPDGN--------- 518
               +Y+G+P+MI +N     L NG++G+     +G    WF   +   G          
Sbjct: 555 -EGHFYQGQPIMIVKNHHPQRLSNGEVGVIWPDSKGKLYAWFYQDSQASGQNGSSQKASA 613

Query: 519 ---------------IKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILP----SQRTP 559
                          ++S+  SR+P+ ET +AMT+HKSQGSEF+H  LILP     +   
Sbjct: 614 NAGDSADKTLAQKQALRSISLSRVPQFETVYAMTIHKSQGSEFNHVVLILPKPDSEKAAN 673

Query: 560 VVTRELVYTAVTRARRRLSLYADERILSAAIATRTERRSGLAALFS 605
           +  R LVYT +TRA+    + +D    +  +    +R SGL+ + S
Sbjct: 674 LFHRGLVYTGLTRAKDGCLIISDNATFTHMVQRVDKRYSGLSEVIS 719