Pairwise Alignments

Query, 243 a.a., DNA-binding transcriptional activator (NCBI) from Escherichia coli BW25113

Subject, 252 a.a., DNA-binding transcriptional repressor from Escherichia coli BL21

 Score =  103 bits (257), Expect = 3e-27
 Identities = 65/229 (28%), Positives = 113/229 (49%), Gaps = 4/229 (1%)

Query: 5   RQQAIVDLLLNHTSLTTEALSEQLKVSKETIRRDLNELQTQGKILRNHGRAKYIHRQNQD 64
           R   I++L+     ++TE L E   VS +TIRRDLNEL  Q  ILR+HG A      +  
Sbjct: 6   RHNGIIELVKQQGYVSTEELVEHFSVSPQTIRRDLNELAEQNLILRHHGGAAL---PSSS 62

Query: 65  SGDPFHIRLKSHYAHKADIAREALAWIEEGMVIALDASSTCWYLARQLPD-INIQVFTNS 123
              P+H R  +    K  IAR+    I  G  + +D  +T   +A  L +  N+++ TN+
Sbjct: 63  VNTPWHDRKATQTEEKERIARKVAEQIPNGSTLFIDIGTTPEAVAHALLNHSNLRIVTNN 122

Query: 124 HPICHELGKRERIQLISSGGTLERKYGCYVNPSLISQLKSLEIDLFIFSCEGIDSSGALW 183
             + + L  ++  ++I +GG L  + G  +  + +  +    +D  I    GIDS G+L 
Sbjct: 123 LNVANTLMVKQDFRIILAGGELRSRDGGIIGEATLDFISQFRLDFGILGISGIDSDGSLL 182

Query: 184 DSNAINADYKSMLLKRAAQSLLLIDKSKFNRSGEARIGHLDEVTHIISD 232
           + +      K  +++ +   +L++D SKF R+    +G +  V  + +D
Sbjct: 183 EFDYHEVRTKRAIIENSRHVMLVVDHSKFGRNAMVNMGSISMVDAVYTD 231