Pairwise Alignments

Query, 243 a.a., DNA-binding transcriptional activator (NCBI) from Escherichia coli BW25113

Subject, 252 a.a., putative DNA-binding transcriptional regulator from Escherichia coli BL21

 Score =  115 bits (287), Expect = 1e-30
 Identities = 72/230 (31%), Positives = 122/230 (53%), Gaps = 3/230 (1%)

Query: 5   RQQAIVDLLLNHTSLTTEALSEQLKVSKETIRRDLNELQTQGKILRNHGRAKYIHRQNQD 64
           R QAI  ++ N   +T   LS   +V++ETIRRDL +L+ +G + R +G A  ++     
Sbjct: 6   RIQAIKQMVANDKKVTVSNLSGIFQVTEETIRRDLEKLEDEGFLTRTYGGA-VLNTAMLT 64

Query: 65  SGDPFHIRLKSHYAHKADIAREALAWIEEGMVIALDASSTCWYLARQLPD-INIQVFTNS 123
               F+ R  S Y  K  IAR+AL +I+    +A D+SST   L + L D  ++ + TNS
Sbjct: 65  ENIHFYKRASSFYEEKQLIARKALPFIDNKTTMAADSSSTVMELLKLLQDRSDLTLLTNS 124

Query: 124 HPICHELGKRERIQLISSGGTLERKYGCYVNPSLISQLKSLEIDLFIFSCEGIDSSGALW 183
               H L + E I+++S+GG L +             +    +D+ + SC+G+D +    
Sbjct: 125 AEAIHVLAQSE-IKVVSTGGELNKNTLSLQGRITKEIISRYHVDIMVMSCKGLDINSGAL 183

Query: 184 DSNAINADYKSMLLKRAAQSLLLIDKSKFNRSGEARIGHLDEVTHIISDE 233
           DSN   A+ K  ++++A +  LL+D SKF+R    ++     + +II+D+
Sbjct: 184 DSNEAEAEIKKTMIRQATEVALLVDHSKFDRKAFVQLADFSHINYIITDK 233