Pairwise Alignments

Query, 502 a.a., hypothetical protein (NCBI) from Escherichia coli BW25113

Subject, 518 a.a., CRISPR-associated protein, Cse1 family from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score = 75.1 bits (183), Expect = 6e-18
 Identities = 79/307 (25%), Positives = 124/307 (40%), Gaps = 25/307 (8%)

Query: 2   NLLIDNWIPVRPRNG--GKVQIINLQSLYCSRDQWRLSLPRDDMELAALALLVCIGQIIA 59
           +LL   W+PVR ++G  GK+  ++L       +   ++  R D++ AA   L+ + Q   
Sbjct: 5   SLLTTPWLPVRFKDGSTGKLAPVDL----ADENVVDIAATRADLQGAAWQFLLGLLQCSI 60

Query: 60  PAKDDVEFRHRIMNPLTEDEFQQLIAPWIDMFYLNHAEHPFMQTKGVKANDVTPMEKLLA 119
             K    +     + L  D   + +AP    F        FMQ     + +   +  LL 
Sbjct: 61  APKRYKNWEDIWFDGLHADVLHKALAPLEHAFQFGAETPSFMQDFEPLSGEKVSIASLLP 120

Query: 120 GVSGATNCAFVN----QPGQGEALCGGCTAIALFNQANQAPGFGGGFKSGLRGGTPVTTF 175
            + GA    F      + G  E  C  C A+ALF+    AP  G G+++GLRGG P+TT 
Sbjct: 121 EIPGAQTTKFNKDHFVKRGVTERFCPHCAALALFSLQLNAPAGGKGYRTGLRGGGPLTTL 180

Query: 176 V--------RGIDLRSTVLLNVLTLPRLQKQFPNESHTENQPTWIKPIKSNESIPA---- 223
           V        R   L   + LNV+         P++      P W+   +++E   A    
Sbjct: 181 VELQEYQGERQTPLWRKLWLNVMPQDTADLPLPDQCDATVFP-WLAATRTSEQANAVTTP 239

Query: 224 SSIGFVRGLFWQPAHIEL-CDPIGIGKCSCCGQESNLRYTGFLKEKFTFTVNGLWPHPHS 282
             +  ++  +  P  I L    +  G C  CG ES+    GF+  K        W HP +
Sbjct: 240 EQVNKLQAYWGMPRRIRLDFATLQSGCCDICGAESD-ELLGFMTVKNYGVNYDGWRHPLT 298

Query: 283 PCLVTVK 289
           P    VK
Sbjct: 299 PYRAPVK 305