Pairwise Alignments

Query, 330 a.a., RNA polymerase sigma factor (NCBI) from Escherichia coli BW25113

Subject, 334 a.a., RNA polymerase sigma factor from Pseudomonas simiae WCS417

 Score =  413 bits (1061), Expect = e-120
 Identities = 211/277 (76%), Positives = 238/277 (85%)

Query: 53  RVLDATQLYLGEIGYSPLLTAEEEVYFARRALRGDVASRRRMIESNLRLVVKIARRYGNR 112
           R LDATQLYL EIG+SPLLT EEEV+FAR + +GD A R+RMIESNLRLVVKIARRY NR
Sbjct: 58  RALDATQLYLNEIGFSPLLTPEEEVHFARLSQKGDPAGRKRMIESNLRLVVKIARRYVNR 117

Query: 113 GLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIV 172
           GL+LLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIH+V
Sbjct: 118 GLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHVV 177

Query: 173 KELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEK 232
           KELNVYLR AREL+ KLDHEPS EEIA  L+KPV +V RML LNER++SVD  LG DS+K
Sbjct: 178 KELNVYLRAARELTQKLDHEPSPEEIANLLEKPVGEVKRMLGLNERVSSVDVSLGPDSDK 237

Query: 233 ALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVG 292
            LLD L D++   P +  QDDD+ QSI +WL EL  KQREV+ RRFGL G+E++TLEDVG
Sbjct: 238 TLLDTLTDDRPTDPCELLQDDDLSQSIDQWLSELTDKQREVVIRRFGLRGHESSTLEDVG 297

Query: 293 REIGLTRERVRQIQVEGLRRLREILQTQGLNIEALFR 329
            EIGLTRERVRQIQVEGL+RLREIL+  GL+ E+LF+
Sbjct: 298 LEIGLTRERVRQIQVEGLKRLREILEKNGLSSESLFQ 334