Pairwise Alignments

Query, 330 a.a., RNA polymerase sigma factor (NCBI) from Escherichia coli BW25113

Subject, 335 a.a., RNA polymerase, sigma S (sigma 38) factor from Pseudomonas putida KT2440

 Score =  414 bits (1063), Expect = e-120
 Identities = 219/327 (66%), Positives = 256/327 (78%), Gaps = 9/327 (2%)

Query: 10  DLNEDAEFDENGVEVFDEKALVEQEPSDNDLAEEELLSQGATQ-------RVLDATQLYL 62
           D+++D    E G+ +  E  +V  EP+ + +           Q       R LDATQLYL
Sbjct: 11  DIDDDVLLMETGIVL--ETDVVSDEPAVSSVRTRAKSGSSLKQHKYIDYSRALDATQLYL 68

Query: 63  GEIGYSPLLTAEEEVYFARRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEE 122
            EIG+SPLL+ EEEV+FAR + +GD A R+RMIESNLRLVVKIARRY NRGL+LLDLIEE
Sbjct: 69  NEIGFSPLLSPEEEVHFARLSQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEE 128

Query: 123 GNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTA 182
           GNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIH+VKELNVYLR A
Sbjct: 129 GNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHVVKELNVYLRAA 188

Query: 183 RELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEK 242
           REL+ KLDHEPS EEIA  L+KPV +V RML LNER++SVD  LG DS+K LLD L D++
Sbjct: 189 RELTQKLDHEPSPEEIATLLEKPVAEVKRMLGLNERVSSVDVSLGPDSDKTLLDTLTDDR 248

Query: 243 ENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERV 302
              P +  QDDD+ QSI +WL EL  KQREV+ RRFGL G+E++TLEDVG EIGLTRERV
Sbjct: 249 PTDPCELLQDDDLSQSIDQWLGELTDKQREVVVRRFGLRGHESSTLEDVGLEIGLTRERV 308

Query: 303 RQIQVEGLRRLREILQTQGLNIEALFR 329
           RQIQVEGL+RLREIL+  GL+ E+LF+
Sbjct: 309 RQIQVEGLKRLREILEKNGLSSESLFQ 335