Pairwise Alignments

Query, 330 a.a., RNA polymerase sigma factor (NCBI) from Escherichia coli BW25113

Subject, 679 a.a., RNA polymerase sigma factor RpoD from Magnetospirillum magneticum AMB-1

 Score =  213 bits (543), Expect = 9e-60
 Identities = 101/246 (41%), Positives = 167/246 (67%)

Query: 69  PLLTAEEEVYFARRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLI 128
           P+      V   +R  R    +++ MIE+NLRLV+ IA++Y NRGL  LDLI+EGN+GL+
Sbjct: 420 PISEYRRIVQTVQRGEREASRAKKEMIEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLM 479

Query: 129 RAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHK 188
           +AV+KF+  RG++FSTYATWWIRQ I R+I +Q RTIR+P+H+++ +N  +RT+R++ H+
Sbjct: 480 KAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLVRTSRQMLHE 539

Query: 189 LDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPED 248
           +  EP+ EE+AE+L  P++ V ++L++ +   S++TP+G + +  L D + D+    P D
Sbjct: 540 IGREPTPEELAEKLSMPLEKVRKVLKIAKEPISLETPIGDEEDSHLGDFIEDKNAVLPLD 599

Query: 249 TTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVE 308
                +++++  + L  L  ++  VL  RFG+      TLE+VG++  +TRER+RQI+ +
Sbjct: 600 AAIQANLRETTTRVLASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAK 659

Query: 309 GLRRLR 314
            LR+L+
Sbjct: 660 ALRKLK 665



 Score = 29.3 bits (64), Expect = 3e-04
 Identities = 26/89 (29%), Positives = 39/89 (43%), Gaps = 5/89 (5%)

Query: 13  EDAEFDENGVEVFDEKALVEQEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLT 72
           E  E ++N  E  +E+    +  S     +EE L      R  D  ++YL E+G   LL+
Sbjct: 79  ESEEGEDNTPEAAEEETTETEGYSGAGNVDEEDLG-----RTDDPVRMYLREMGSVELLS 133

Query: 73  AEEEVYFARRALRGDVASRRRMIESNLRL 101
            E E+  A+R   G       + ES L L
Sbjct: 134 REGEIAIAKRIEAGREMMIGGICESPLTL 162