Pairwise Alignments

Query, 330 a.a., RNA polymerase sigma factor (NCBI) from Escherichia coli BW25113

Subject, 615 a.a., RNA polymerase sigma factor, sigma-70 family from Kangiella aquimarina DSM 16071

 Score =  213 bits (543), Expect = 8e-60
 Identities = 116/308 (37%), Positives = 189/308 (61%), Gaps = 9/308 (2%)

Query: 15  AEFDENGVEVFDEKALVEQEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAE 74
           +E D   +E   +K     EP     AEE L +Q   Q + ++  L + EI       A 
Sbjct: 311 SEADPTWIEQHVKKKSKYSEPLAEH-AEEILKAQRKLQLIEESCSLSVMEIK-----EAN 364

Query: 75  EEVYFARRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKF 134
            E+       R    +++ M+E+NLRLV+ IA++Y NRGL  LDLI+EGN+GL++AV+KF
Sbjct: 365 REMSIGEAKAR---RAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKF 421

Query: 135 DPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPS 194
           +  RG++FSTYATWWIRQ I R+I +Q RTIR+P+H+++ +N   R +R++  ++  EP 
Sbjct: 422 EYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPQ 481

Query: 195 AEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDD 254
            EE+AE+++ P D + ++L++ +   S++TP+G D +  L D + D   + P D    + 
Sbjct: 482 PEELAERMEMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTIDSPVDAATGES 541

Query: 255 MKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLR 314
           +K+   + L  L A++ +VL  RFG+      TLE+VG++  +TRER+RQI+ + LR+LR
Sbjct: 542 LKEVTDEILAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLR 601

Query: 315 EILQTQGL 322
              +++ L
Sbjct: 602 HPSRSEKL 609



 Score = 33.1 bits (74), Expect = 2e-05
 Identities = 21/79 (26%), Positives = 39/79 (49%), Gaps = 10/79 (12%)

Query: 18  DENGVEVF------DEKALVEQEPSDNDLAEEELLSQGATQ----RVLDATQLYLGEIGY 67
           ++ G++V+      DE  + ++  +D + AEE   +  +      R  D  ++Y+ E+G 
Sbjct: 50  NDMGIQVYETTPDADELLMNDESVTDEEAAEEAAAALASVDSEFGRTTDPVRMYMREMGS 109

Query: 68  SPLLTAEEEVYFARRALRG 86
             LLT E E+  A+R   G
Sbjct: 110 VELLTREGEIDIAKRIEEG 128