Pairwise Alignments

Query, 330 a.a., RNA polymerase sigma factor (NCBI) from Escherichia coli BW25113

Subject, 287 a.a., RNA polymerase sigma factor, sigma-70 family from Echinicola vietnamensis KMM 6221, DSM 17526

 Score =  223 bits (569), Expect = 3e-63
 Identities = 115/277 (41%), Positives = 177/277 (63%)

Query: 46  LSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFARRALRGDVASRRRMIESNLRLVVKI 105
           +S+  T R   +   YL EIG   LLTA+EEV  A+R   GD  +  ++ ++NLR VV +
Sbjct: 6   ISKQITNRESQSLDKYLQEIGKVDLLTADEEVVLAKRIREGDQLALEKLTKANLRFVVSV 65

Query: 106 ARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTI 165
           A++Y N+GL+L DLI EGNLGLI+A ++FD  RGF+F +YA WWIRQ+I +A+  Q+R +
Sbjct: 66  AKQYQNQGLSLGDLINEGNLGLIKAAQRFDETRGFKFISYAVWWIRQSILQALAEQSRIV 125

Query: 166 RLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTP 225
           RLP++ V  LN   +T  EL  + + EPS EE+AE L+    +V   ++++ R  S+D P
Sbjct: 126 RLPLNRVGSLNKISKTFSELEQRFEREPSPEELAEVLEVTAGEVVDTMKISGRHVSMDAP 185

Query: 226 LGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEA 285
                E +LLD+L ++ E  P+D   +D +++ + + L  L  ++ +V+   FGL G  A
Sbjct: 186 FVQGEENSLLDVLENDGEEKPDDGLMNDSLRKEVQRALSTLTQREADVITLYFGLNGEHA 245

Query: 286 ATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQGL 322
            TLE++G +  LTRERVRQI+ + +RRLR   +++ L
Sbjct: 246 MTLEEIGEKFNLTRERVRQIKEKAIRRLRHTSRSKTL 282