Pairwise Alignments

Query, 330 a.a., RNA polymerase sigma factor (NCBI) from Escherichia coli BW25113

Subject, 648 a.a., RNA polymerase sigma factor RpoD from Brevundimonas sp. GW460-12-10-14-LB2

 Score =  212 bits (539), Expect = 2e-59
 Identities = 96/225 (42%), Positives = 161/225 (71%)

Query: 90  SRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWW 149
           +++ M+E+NLRLV+ IA++Y NRGL  LDLI+EGN+GL++AV+KF+  RG++FSTYATWW
Sbjct: 410 AKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWW 469

Query: 150 IRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDV 209
           IRQ I R+I +Q RTIR+P+H+++ +N  +RT+R++ H++  EP+ EE+AE+L  P++ V
Sbjct: 470 IRQAITRSIADQARTIRIPVHMIETINKIVRTSRQMLHEIGREPTPEELAEKLAMPLEKV 529

Query: 210 SRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAK 269
            ++L++ +   S++TP+G + +  L D + D+    P D     +++++  + L  L  +
Sbjct: 530 RKVLKIAKEPISLETPIGDEEDSHLGDFIEDKNAVLPIDAAIQSNLRETTTRVLASLTPR 589

Query: 270 QREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLR 314
           +  VL  RFG+      TLE+VG++  +TRER+RQI+ + LR+L+
Sbjct: 590 EERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLK 634



 Score = 32.3 bits (72), Expect = 3e-05
 Identities = 29/90 (32%), Positives = 42/90 (46%), Gaps = 5/90 (5%)

Query: 15  AEFDENGVEVFD-EKALVEQEPSD----NDLAEEELLSQGATQRVLDATQLYLGEIGYSP 69
           A   E GV V + E+   EQ+ +D       A  E  ++ A  R  D  ++YL E+G   
Sbjct: 63  AMLSEMGVNVVEAEEDAQEQQSTDVAAAAGTAVAETPAKSAYDRTDDPVRMYLREMGSVE 122

Query: 70  LLTAEEEVYFARRALRGDVASRRRMIESNL 99
           LL+ E E+  A+R   G  A    + ES L
Sbjct: 123 LLSREGEIAIAKRIEAGRDAMISGLCESAL 152