Pairwise Alignments

Query, 330 a.a., RNA polymerase sigma factor (NCBI) from Escherichia coli BW25113

Subject, 684 a.a., RNA polymerase sigma factor RpoD from Agrobacterium fabrum C58

 Score =  211 bits (536), Expect = 6e-59
 Identities = 96/225 (42%), Positives = 161/225 (71%)

Query: 90  SRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWW 149
           +++ M+E+NLRLV+ IA++Y NRGL  LDLI+EGN+GL++AV+KF+  RG++FSTYATWW
Sbjct: 446 AKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWW 505

Query: 150 IRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDV 209
           IRQ I R+I +Q RTIR+P+H+++ +N  +RT+R++ H++  EP+ EE+AE+L  P++ V
Sbjct: 506 IRQAITRSIADQARTIRIPVHMIETINKIVRTSRQMLHEIGREPTPEELAEKLAMPLEKV 565

Query: 210 SRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAK 269
            ++L++ +   S++TP+G + +  L D + D+    P D     +++++  + L  L  +
Sbjct: 566 RKVLKIAKEPISLETPVGDEEDSHLGDFIEDKNALLPIDAAIQANLRETTTRVLASLTPR 625

Query: 270 QREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLR 314
           +  VL  RFG+      TLE+VG++  +TRER+RQI+ + LR+L+
Sbjct: 626 EERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLK 670



 Score = 32.7 bits (73), Expect = 3e-05
 Identities = 34/118 (28%), Positives = 49/118 (41%), Gaps = 2/118 (1%)

Query: 1   MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEQEPSDNDLAEEELLSQGATQRVLDATQL 60
           M  N ++  D  E A  +++G    +E    E  PS    A      +  T R  D  ++
Sbjct: 73  MGINVIEDEDAEEAAPAEDDGDSDNEESEGGELAPSGGT-ALATAKKKEPTDRTDDPVRM 131

Query: 61  YLGEIGYSPLLTAEEEVYFARRALRGDVASRRRMIESNLRL-VVKIARRYGNRGLALL 117
           YL E+G   LL+ E E+  A+R   G       + ES L    + I R   N G  LL
Sbjct: 132 YLREMGSVELLSREGEIAIAKRIEAGRETMISGLCESPLTFQALIIWRDELNEGTTLL 189