Pairwise Alignments

Query, 692 a.a., DNA-binding transcriptional activator (NCBI) from Escherichia coli BW25113

Subject, 565 a.a., nif-specific transcriptional activator NifA from Magnetospirillum magneticum AMB-1

 Score =  258 bits (660), Expect = 4e-73
 Identities = 153/356 (42%), Positives = 212/356 (59%), Gaps = 17/356 (4%)

Query: 268 SKEMLLIN-LHERDDLAPYERMLFDTWGNQIQTLCLLPLMSGDTMLGVLKLAQCEEKVFT 326
           ++E LL+  + E DD    ER+ F          C+ P+ + D   G L + +       
Sbjct: 101 AEEPLLVEYIAENDDSLEDERLSF---------FCV-PIKTTDKPFGALSVERSWSDSAQ 150

Query: 327 TTNLNLLRQIAERVAIAVDNALAYQEIHRLKERLVDENLALTEQLNNVDSEFG-----EI 381
               + LR +     +    A  ++++   +E L+ +   L +++  V          ++
Sbjct: 151 YVFEHDLRFLTMVATLIGQTASLHRKLANDRETLMTDAARLHKRMAEVRPTLPIRGLEDV 210

Query: 382 IGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAM 441
           +G SEAM  V  QV+  A + +T+L+ GE+GTGKEL+ARAIH LS R  +  +K+NCAA+
Sbjct: 211 VGTSEAMARVFAQVQQAAPTKATILLRGESGTGKELVARAIHILSARAQKPFIKVNCAAL 270

Query: 442 PAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQE 501
              +LES+LFGHE+GAFTGA A R GRFEL+   +LFLDE+G++    Q KLLRVLQE E
Sbjct: 271 SESVLESELFGHEKGAFTGAVADRKGRFELSSGGTLFLDEIGEISSNFQAKLLRVLQEGE 330

Query: 502 FERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPL 561
           FER+G NK ++ DVRLIAATNRDL+  VAD  FR+DLYYRLNV P+ LPPLRER  DIPL
Sbjct: 331 FERVGGNKTVKVDVRLIAATNRDLEAGVADGSFRADLYYRLNVVPLFLPPLRERSGDIPL 390

Query: 562 LAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGNVL 617
           LA  F  +     GR + +     L  L    +PGNVRELEN + R   +T+G V+
Sbjct: 391 LAMYFLKQFNEENGRGL-AFSQNALEALQRCYFPGNVRELENCVYRTATMTKGEVI 445