Pairwise Alignments

Query, 692 a.a., DNA-binding transcriptional activator (NCBI) from Escherichia coli BW25113

Subject, 670 a.a., putative 2-component regulator, interaction with sigma 54 (VIMSS) from Escherichia coli BW25113

 Score =  501 bits (1290), Expect = e-146
 Identities = 286/564 (50%), Positives = 379/564 (67%), Gaps = 17/564 (3%)

Query: 137 FIRYDDRPWSEKEFNRLQTFTQIVSVVTEQIQSRVVNNVDYELLCRERDNFRILVAITNA 196
           FIR     ++ ++        +I++ V +   +     V   LL ++RD+ R+LV ITNA
Sbjct: 104 FIRTHGSRFTSQDCTLFNWLARIITPVLQSWLNDEEQQVALRLLEKDRDHHRVLVDITNA 163

Query: 197 VLSRLDMDELVSEVAKEIHYYFDIDDISIVLRSHRKNKLNIYSTHYLDKQHPAHEQSEVD 256
           VLS LD+D+L+++VA+EIH++F +  +S+VL  HRKN+        L   H A     + 
Sbjct: 164 VLSHLDLDDLIADVAREIHHFFGLASVSMVLGDHRKNEKFSLWCSDLSASHCACLPRCMP 223

Query: 257 EAGTLTERVFKSKEMLLINLHERDDLAPYER--MLFDTWGNQIQTLCLLPLMSGDTMLGV 314
               L  +  ++++  L   H  DDL  ++R  +L     N  ++  L+PL  G+   G 
Sbjct: 224 GESVLLTQTLQTRQPTLT--HRADDLFLWQRDPLLLLLASNGCESALLIPLTFGNHTPGA 281

Query: 315 LKLAQCEEKVFTTTNLNLLRQIAERVAIAVDNALAYQEIHRLKERLVDENLALTEQLNNV 374
           L LA     +F+  N  LL+ IA+R+AIAV NA A++ +  L+E L  EN  L+EQL + 
Sbjct: 282 LLLAHTSSTLFSEENCQLLQHIADRIAIAVGNADAWRSMTDLQESLQQENHQLSEQLLS- 340

Query: 375 DSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMV 434
           +   G+II +S+AM  +L+QV++VA+SDSTVLI GETGTGKE+IARAIH LS R ++ +V
Sbjct: 341 NLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLV 400

Query: 435 KMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLL 494
           K+NCAA+PA LLES+LFGH++GAFTGA     GRFE+AD  +LFLDE+GD+PLELQPKLL
Sbjct: 401 KINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLELQPKLL 460

Query: 495 RVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRE 554
           RVLQE+E ERLG ++ I  +VR+IAATNRDL +MV DR+FRSDL+YRLNVFP+ LPPLR+
Sbjct: 461 RVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRD 520

Query: 555 RPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRG 614
           RPEDIPLLAK FT K+AR + R ID+IP E LR L + +WPGNVRELENVIERAVLLTRG
Sbjct: 521 RPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELENVIERAVLLTRG 580

Query: 615 NVLQLSL------------PDIVLPEPETPPAATVVALEGEDEYQLIVRVLKETNGVVAG 662
           N L L L             D  L                E+E Q IV+VL+ETNG+VAG
Sbjct: 581 NSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEEERQRIVQVLRETNGIVAG 640

Query: 663 PKGAAQRLGLKRTTLLSRMKRLGI 686
           P+GAA RLG+KRTTLLSRM+RLGI
Sbjct: 641 PRGAATRLGMKRTTLLSRMQRLGI 664