Pairwise Alignments

Query, 504 a.a., putative 2-component transcriptional regulator (VIMSS) from Escherichia coli BW25113

Subject, 523 a.a., nif-specific transcriptional activator NifA from Dickeya dadantii 3937

 Score =  273 bits (697), Expect = 1e-77
 Identities = 169/381 (44%), Positives = 227/381 (59%), Gaps = 17/381 (4%)

Query: 114 VGLPLFA-GQNLIGALTLDGMQPDQFDVFSDEELRLIAALAAGALSNALLIEQLESQNML 172
           +G+PL    Q  IG L    M   +++       R +  +A+  +    L+   +     
Sbjct: 131 IGVPLLGIEQQPIGVLAAQPMA--RYEERLPASTRFLETVASLIVQTVRLMRAPQRDGEP 188

Query: 173 PGDATPFEAVKQTQ------MIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAK 226
           P  A    A K  +      M+G S  M Q  + I  V+  D  VL+ GE+GTGKELVA 
Sbjct: 189 PSVANRPAACKTPRPFGFDSMVGTSAAMRQTLEIIRQVSRWDTTVLVRGESGTGKELVAN 248

Query: 227 AIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLD 286
           AIH  SPRA  P V  NCAALP+++ ESELFGH KGAFTGA+  R G+FE+AD GTLFLD
Sbjct: 249 AIHYNSPRAAAPFVKFNCAALPDNLLESELFGHEKGAFTGAVRQRKGRFELADGGTLFLD 308

Query: 287 EIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFH 346
           EIGE S + QAKLLR+LQ G+++RVG D  LRV+VR++AATNR L EEV AG FR DL++
Sbjct: 309 EIGESSASFQAKLLRILQEGEMERVGGDETLRVNVRIIAATNRHLEEEVRAGHFREDLYY 368

Query: 347 RLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRE 406
           RL+V P+S+PPLRER +D++ LA +  ++    QG + + +S GA  LL  Y++PGNVRE
Sbjct: 369 RLNVMPVSLPPLRERQEDIVELAQFLVKKIAAHQGRT-LRISDGAIRLLMGYNWPGNVRE 427

Query: 407 LEHAIHRAVVLARATRSGDEVILEAQHFAFPEVTLPTPEVAAVP-VVKQNLREATEAFQR 465
           LE+ + RA V+  +     +VIL   H A P +  PTP  AA    + QNL E      R
Sbjct: 428 LENCLERAAVMTDSGLIDRDVILFNHHDAIPMMNKPTPPAAAEEGWLDQNLDE------R 481

Query: 466 ETIRQALAQNHHNWAACARML 486
           + +  AL +     A  AR+L
Sbjct: 482 QRLIAALEKTGWVQAKAARLL 502