Pairwise Alignments

Query, 390 a.a., multidrug efflux system (NCBI) from Escherichia coli BW25113

Subject, 387 a.a., multidrug resistance efflux pump membrane fusion protein from Escherichia coli BL21

 Score =  356 bits (913), Expect = e-103
 Identities = 187/377 (49%), Positives = 255/377 (67%), Gaps = 4/377 (1%)

Query: 15  KKSGKRKRLLLLLTLLFIIIAVAIGIYWFLVLRHFEETDDAYVAGNQIQIMSQVSGSVTK 74
           K S +RK   LL  +LFI  + A   YW + L     TDDAYV GN   I +QVSGSVT 
Sbjct: 9   KHSNRRKYFSLLAVVLFIAFSGAYA-YWSMELEDMISTDDAYVTGNADPISAQVSGSVTV 67

Query: 75  VWADNTDFVKEGDVLVTLDPTDARQAFEKAKTALASSVRQTHQLMINSKQLQANIEVQKI 134
           V   +T++V++GD+LV+LD TDA  A  KAK  LA+ VRQT++L +  KQ  A +   +I
Sbjct: 68  VNHKDTNYVRQGDILVSLDKTDATIALNKAKNNLANIVRQTNKLYLQDKQYSAEVASARI 127

Query: 135 ALAKAQSDYNRRVPLGNANLIGREELQHARDAVTSAQAQLDVAIQQYNANQAMILGTKLE 194
              ++  DYNRRVPL    +I +E L+H +D + S++A L+ AIQ Y AN+A+++ T L 
Sbjct: 128 QYQQSLEDYNRRVPLAKQGVISKETLEHTKDTLISSKAALNAAIQAYKANKALVMNTPLN 187

Query: 195 DQPAVQQAATEVRNAWLALERTRIISPMTGYVSRRAVQPGAQISPTTPLMAVVPATNMWV 254
            QP V +AA   + AWLAL+RT I SP+TGY+++R+VQ G  +SP   LMAVVPA  MWV
Sbjct: 188 RQPQVVEAADATKEAWLALKRTDIKSPVTGYIAQRSVQVGETVSPGQSLMAVVPARQMWV 247

Query: 255 DANFKETQIANMRIGQPVTITTDIYGDDVKYTGKVVGLDMGTGSAFSLLPAQNATGNWIK 314
           +ANFKETQ+ ++RIGQ V I +D+YG++V + G+V G++MGTG+AFSLLPAQNATGNWIK
Sbjct: 248 NANFKETQLTDVRIGQSVNIISDLYGENVVFHGRVTGINMGTGNAFSLLPAQNATGNWIK 307

Query: 315 VVQRLPVRIELDQKQLEQYPLRIGLSTLVSVNTTNRD---GQVLANKVRSTPVAVSTARE 371
           +VQR+PV + LD K+L ++PLRIGLS   +++T N D      LA+ V S P   S A  
Sbjct: 308 IVQRVPVEVSLDPKELMEHPLRIGLSMTATIDTKNEDIAEMPELASTVTSMPAYTSKALV 367

Query: 372 ISLAPVNKLIDDIVKAN 388
           I  +P+ K I +I+  N
Sbjct: 368 IDTSPIEKEISNIISHN 384