Pairwise Alignments

Query, 670 a.a., putative 2-component regulator, interaction with sigma 54 (VIMSS) from Escherichia coli BW25113

Subject, 725 a.a., formate hydrogenlyase transcriptional activator FlhA from Dickeya dianthicola 67-19

 Score =  553 bits (1424), Expect = e-161
 Identities = 312/615 (50%), Positives = 408/615 (66%), Gaps = 19/615 (3%)

Query: 70  DGSDVTATTEYQGEMVDYSRHAVLLGSSGMAELRFIRTHGSRFTSQDCTLFNWLARIITP 129
           D   +T    Y G + DY +  +     G+  + F++T GSRFT  +   F  LA ++  
Sbjct: 111 DFPHLTEQPAYAG-LSDYCQLPLRGTHRGLGGVEFLKTDGSRFTDNELDFFQALAGVVAL 169

Query: 130 VLQSWLNDEEQQVALRLLEKDRDHHRVLVDITNAVLSHLDLDDLIADVAREIHHFFGLAS 189
           V+++    E+       L  +RDH R+LVD+TN V+S L+L  L  +V+REIH FFG+  
Sbjct: 170 VVETIREREQVLQEEERLRHERDHLRILVDVTNTVISKLELKALALEVSREIHRFFGIDF 229

Query: 190 VSMVLGDHRKNEKFSLWCSDLSASHCACLPRCMPGE----SVLLTQTLQTRQPTLTHRAD 245
           +++VL D     +   + + +     A  P+ + GE      L    +   QP L     
Sbjct: 230 IALVLKDGEGEAQTLKYLATVYPQ--AGAPKTVQGEVDRAQTLADGVMAQHQPQLVQVTQ 287

Query: 246 DLFLWQRDPLLLLLASNGCESALLIPLTFGNHTPGALLLAHTSSTLFSEENCQLLQHIAD 305
                +  PL      N      L+PL FGN T G L LAH S+   SE + +LL+ IA 
Sbjct: 288 RPQAGEPRPLSQWF-DNALSHVCLLPLAFGNRTLGVLELAHRSALAVSEADLRLLRQIAA 346

Query: 306 RIAIAVGNADAWRSMTDLQESLQQENHQLSEQLLSNLG------IGDIIYQSQAMEDLLQ 359
           RIAIA+ NA A+  +T +++SL  EN  L+EQL  ++        G+II +S A+  +L+
Sbjct: 347 RIAIALDNALAYEQITRMKDSLVHENFYLTEQLTEHIHQRSGDEFGEIIGRSVAIRQVLE 406

Query: 360 QVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGH 419
           QV++VA SDSTVLI GETGTGKE+IARAIH LS R+ + +VK+NCAAIP+ LLES+LFGH
Sbjct: 407 QVEMVAASDSTVLILGETGTGKELIARAIHSLSQRKAQHMVKMNCAAIPSGLLESDLFGH 466

Query: 420 DKGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPV 479
           +KGAFTGA N  +GRFE+AD  TLFLDE+GD+PLELQPKLLRVLQEREIERLGGS+ IPV
Sbjct: 467 EKGAFTGATNQRQGRFELADNSTLFLDEVGDIPLELQPKLLRVLQEREIERLGGSKVIPV 526

Query: 480 NVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARH 539
           +VR+IAATNRDL QMV DR++RSDL+YRLNVFP+ +PPLR+RPEDIPLL K FT+K+AR 
Sbjct: 527 DVRLIAATNRDLKQMVADREYRSDLYYRLNVFPIVIPPLRERPEDIPLLVKFFTRKIARR 586

Query: 540 MNRAIDAIPTEALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLN 599
           MNR ID+IP++ LRQL    WPGNVRELENV+ERAV+LTRG +LNLH++  Q  L P   
Sbjct: 587 MNRTIDSIPSDMLRQLSRLPWPGNVRELENVVERAVILTRGTTLNLHMDELQHHLSPLDV 646

Query: 600 EDSALRS-----SMAQLLHPTTPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTT 654
              + R        A+         +E ER+RI++VLRETNGIVAGP+GAA RLG+KRTT
Sbjct: 647 PKPSYRDLTPPPMAAEPSSGPLDAQEEPERERIIRVLRETNGIVAGPKGAAARLGLKRTT 706

Query: 655 LLSRMQRLGISVREV 669
           LLSRMQR+GIS RE+
Sbjct: 707 LLSRMQRMGISAREI 721