Pairwise Alignments

Query, 385 a.a., CPS-53 (KpLE1) prophage; predicted prophage CPS-53 integrase (NCBI) from Escherichia coli BW25113

Subject, 420 a.a., integrase arm-type DNA-binding domain-containing protein from Serratia liquefaciens MT49

 Score =  226 bits (576), Expect = 9e-64
 Identities = 133/401 (33%), Positives = 218/401 (54%), Gaps = 23/401 (5%)

Query: 6   QIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQEARD 65
           ++  AKP+ K Y+L DG G+ L V  +G K W+LRY+  GKEK+L +GKYP ++L +AR 
Sbjct: 7   KVRTAKPEAKAYKLTDGEGMVLLVHPNGSKYWRLRYRFGGKEKMLALGKYPEVSLADART 66

Query: 66  KAWTARKDISVGIDPVKAKKA-----SSNNNSFSAIYKEWYEHKKQVWSVGYATELAKMF 120
           +   ARK +S GIDP + KKA          +F  + ++W+    Q WS  ++  + K  
Sbjct: 67  RRDEARKHLSNGIDPSENKKAVKVEQEQEAITFEVVARDWHA-SNQKWSESHSDRVLKSL 125

Query: 121 DDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTGRAKYN 180
           +D++   IG   I +++   LL  I+  E  G +E A + ++R   + R+A+ +G   YN
Sbjct: 126 EDNLFDAIGKRNIAELKTRDLLTPIKAVEMSGRLEVAARLQQRTTAIMRFAVQSGLIDYN 185

Query: 181 PAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTALRTKELRS 240
           PA ++  A+   ++++   L  ++IP     + T++G  ++ +A ++     +R+ ELR 
Sbjct: 186 PAQEITGAVATAKRQHRAALELNRIPELLHRIDTYTGRPLTRLAVELTLLVFIRSSELRF 245

Query: 241 MLWKNVDFENRIITIDAS------------VMKGRKIHVVPMSDQVVELLTTLSSITKPV 288
             W  VDFE  + TI                 K R  H+VP+S Q + +L  + S++   
Sbjct: 246 ARWSEVDFETAMWTIPGEREPLEGVKHSHRGSKMRTPHLVPLSRQALTILEQIKSMSGN- 304

Query: 289 SEFVFAGRNDKKKPICENAVLLVIKQIGYEGLES--GHGFR-HEFSTIMNEHEWPADAIE 345
            E +F G +D +KP+ EN V   ++ +GY+      GHGFR    S+++    W  DA+E
Sbjct: 305 RELIFVGDHDPRKPMSENTVNKALRVMGYDTKVEVCGHGFRTMACSSLIESGLWSKDAVE 364

Query: 346 VQLAHANGGSVRGIYNH-AQYLDKRREMMQWWADWLDEKVE 385
            Q++H    SVR  Y H A++L +RR M+QWWAD+LD   E
Sbjct: 365 RQMSHQERNSVRAAYIHKAEHLGERRLMVQWWADYLDANRE 405