Pairwise Alignments

Query, 385 a.a., CPS-53 (KpLE1) prophage; predicted prophage CPS-53 integrase (NCBI) from Escherichia coli BW25113

Subject, 419 a.a., tyrosine-type recombinase/integrase from Dickeya dianthicola ME23

 Score =  232 bits (591), Expect = 2e-65
 Identities = 136/400 (34%), Positives = 219/400 (54%), Gaps = 22/400 (5%)

Query: 2   LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ 61
           LT   I  AKP +KPY+L D  GLYL +  +G K+W L+Y+  GKEK L  G YP ++L 
Sbjct: 3   LTDTAIRNAKPLDKPYKLSDAQGLYLLIKPNGSKLWHLKYRFGGKEKKLAFGAYPTVSLA 62

Query: 62  EARDKAWTARKDISVGIDP-VKA---KKASSNNNSFSAIYKEWYEHKKQVWSVGYATELA 117
            AR     AR  +S G DP VK    K+A  N N+F AI ++W     + WS  +A ++ 
Sbjct: 63  SARKLREEARTILSAGDDPGVKKQHDKQAKKNGNTFEAIARQWVAANIR-WSEAHAAKVL 121

Query: 118 KMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTGRA 177
           +  +  + P+IG + + D++   LL  +R  E +G +E A + ++R   + RYA+  G  
Sbjct: 122 RSLELHVFPLIGNVLVTDLKTANLLIPLRVAEKKGCLETAARIQQRTTVIMRYAVQEGLI 181

Query: 178 KYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTALRTKE 237
             NPA DL  A+    K ++P LP +++P   + +  +SG +++ +A ++     +R+ E
Sbjct: 182 ASNPANDLCGAITPPPKNHYPALPLERLPELLERIEGYSGRLLTRLAVQLNLLIFIRSSE 241

Query: 238 LRSMLWKNVDFENRIITIDAS---------VMKGRKI---HVVPMSDQVVELLTTLSSIT 285
           LR   W  +D +N + T+ A            +G K+   H+VP+S Q V +L  L  ++
Sbjct: 242 LRFARWTEIDLDNAMWTLPAQREPITGVRHSERGAKMKTPHLVPLSKQAVTVLKQLKLLS 301

Query: 286 KPVSEFVFAGRNDKKKPICENAVLLVIKQIGYEGLES--GHGFRH-EFSTIMNEHEWPAD 342
               + +F G +D +KP+ EN +   ++ +GY+      GHGFR    S ++    W  D
Sbjct: 302 GN-GDLLFPGDHDARKPMSENTINKALRTMGYDTQADICGHGFRTIACSALIESGRWSKD 360

Query: 343 AIEVQLAHANGGSVRGIYNH-AQYLDKRREMMQWWADWLD 381
           A+E Q++H     VR  Y H A++LD+R +MMQWW+D+LD
Sbjct: 361 AVERQMSHQERNHVRAAYIHKAEHLDERTQMMQWWSDYLD 400