Pairwise Alignments

Query, 385 a.a., CPS-53 (KpLE1) prophage; predicted prophage CPS-53 integrase (NCBI) from Escherichia coli BW25113

Subject, 427 a.a., integrase arm-type DNA-binding domain-containing protein from Dickeya dadantii 3937

 Score =  223 bits (569), Expect = 6e-63
 Identities = 131/401 (32%), Positives = 219/401 (54%), Gaps = 23/401 (5%)

Query: 2   LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ 61
           L   +I   KP  KP+++ D +GLYL V   G ++W L+Y+I+ KE  L +G YP ++L 
Sbjct: 3   LNDSKIRNLKPSAKPFKVSDSHGLYLLVNPGGSRLWYLKYRINRKESRLGLGTYPDVSLA 62

Query: 62  EARDKAWTARKDISVGIDPVK---AKKAS-SNNNSFSAIYKEWYEHKKQVWSVGYATELA 117
           +AR +    RK ++  I+P     A+KAS S   SF  +  +W++  +  WS  +AT L 
Sbjct: 63  DARQQRDGIRKLLAQNINPAHQRAAEKASRSPEKSFRDVALDWHKSNR-TWSENHATRLL 121

Query: 118 KMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTGRA 177
              ++ + P+IG L + +++P   ++++R  E +G +E A++ R+    + R+A+     
Sbjct: 122 ASMNNYLFPVIGHLPVTELKPRHFIDLLRGIEKKGLLEVASRTRQHLCNIMRHAVHQELI 181

Query: 178 KYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATF-SGSIVSLIATKVLRYTALRTK 236
           ++NPA +L   +    K+++P LP +Q+P     +  +  G  ++ +A  +  +  +R+ 
Sbjct: 182 EHNPAANLDGIIATPVKRHYPALPLEQLPELLTRIEDYRQGRELTRLAVSLTLHLFIRSS 241

Query: 237 ELRSMLWKNVDFENRIITIDAS------------VMKGRKIHVVPMSDQVVELLTTLSSI 284
           ELR   W  +DF N I TI A+              K R  H+VP+S Q + +L  +  I
Sbjct: 242 ELRFARWSEIDFRNNIWTIPATRKAIPGVRYSGRGAKMRTPHIVPLSRQTIAILRQIQEI 301

Query: 285 TKPVSEFVFAGRNDKKKPICENAVLLVIKQIGYEGLES--GHGFR-HEFSTIMNEHEWPA 341
           ++     +F G ++  KP+CEN V   ++ +GY+  +   GHGFR    S +M    W  
Sbjct: 302 SRH-QVLIFPGAHNPYKPMCENTVNKALRLMGYDTKDEICGHGFRAMACSALMESGLWSQ 360

Query: 342 DAIEVQLAHANGGSVRGIYNH-AQYLDKRREMMQWWADWLD 381
           DA+E Q++H    SVR  Y H AQYLD R+ MMQWW+D+LD
Sbjct: 361 DAVERQMSHQERNSVRAAYIHKAQYLDARKAMMQWWSDYLD 401