Pairwise Alignments

Query, 385 a.a., CPS-53 (KpLE1) prophage; predicted prophage CPS-53 integrase (NCBI) from Escherichia coli BW25113

Subject, 419 a.a., integrase arm-type DNA-binding domain-containing protein from Dickeya dadantii 3937

 Score =  232 bits (592), Expect = 1e-65
 Identities = 133/401 (33%), Positives = 217/401 (54%), Gaps = 21/401 (5%)

Query: 1   MLTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTL 60
           MLT  ++ +AKP  K Y+L D  GLYL V  SG K+W  RY+  GKE  L  G YP  TL
Sbjct: 1   MLTDSKVRSAKPLAKSYKLTDSQGLYLTVSTSGAKLWYFRYRFGGKENRLAFGPYPQTTL 60

Query: 61  QEARDKAWTARKDISVGIDPVKAKKASS----NNNSFSAIYKEWYEHKKQVWSVGYATEL 116
            EAR+K   ARK ++ GI P + +K ++     +++F ++   W+    ++WS  +A ++
Sbjct: 61  AEAREKRDAARKLLASGISPSQLRKTNNPAVDESHTFQSVTMAWHTSSLKLWSDAHADKI 120

Query: 117 AKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTGR 176
                  + P IG ++I  +E   L ++++  +D+G  + A + R+   ++ R+A+  G 
Sbjct: 121 LICLKRYVFPAIGAMDIAQVETRHLAQLVKSIDDKGVHDVAGRVRQHLTKIMRHAVQQGV 180

Query: 177 AKYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTALRTK 236
            KYNPA DL   +     ++ P LP  ++P   + + ++ G +++ +A ++  +  LR+ 
Sbjct: 181 IKYNPAYDLDGVVTPVATQHHPALPLKRLPELLEKIESYKGRMLTRLALELNLHVFLRSS 240

Query: 237 ELRSMLWKNVDFENRIITIDAS---------VMKGRKI---HVVPMSDQVVELLTTLSSI 284
           ELR   W   + +  I ++ A            +G K+   H+VP+S Q V LL  + +I
Sbjct: 241 ELRFARWDEFNLKAHIWSVPAQREAVNDVRFSERGAKMKDEHLVPLSRQAVALLKQIQAI 300

Query: 285 TKPVSEFVFAGRNDKKKPICENAVLLVIKQIGYEGLES--GHGFRHEFSTIMNEH-EWPA 341
           +   S FVF G +   KP+ EN +   ++ IGY+      GHGFR    + +NE   W  
Sbjct: 301 SGK-SVFVFPGAHTLNKPMSENTINKALRVIGYDTKSEVCGHGFRTMACSALNESGRWSK 359

Query: 342 DAIEVQLAHANGGSVRGIYNH-AQYLDKRREMMQWWADWLD 381
           DAIE Q++H     VR  Y H A++L+ R EMMQWW+D+LD
Sbjct: 360 DAIERQMSHKERNGVRAAYVHKAEHLEARIEMMQWWSDYLD 400