Pairwise Alignments

Query, 385 a.a., CPS-53 (KpLE1) prophage; predicted prophage CPS-53 integrase (NCBI) from Escherichia coli BW25113

Subject, 394 a.a., Int from Escherichia coli BL21

 Score =  381 bits (979), Expect = e-110
 Identities = 188/386 (48%), Positives = 269/386 (69%), Gaps = 7/386 (1%)

Query: 2   LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ 61
           LT  +++ AKPK+KPY+L DG G+YL +  +G K W+++Y+  GKEK+L++G YP +TL 
Sbjct: 3   LTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVTLA 62

Query: 62  EARDKAWTARKDISVGIDPVKAKKAS------SNNNSFSAIYKEWYEHKKQVWSVGYATE 115
           +AR+K   ARK ++ G DP +AKK        S  N+F AI +EW++ K   WS+ Y  E
Sbjct: 63  DAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLQNTFEAIAREWHQSKADRWSLRYRDE 122

Query: 116 LAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTG 175
           +   F+ DI P IG   I +I+PM+LLE +R+ E RGA+E+  K R+RCGEVFRYAIVTG
Sbjct: 123 IIDTFEKDIFPYIGKRPIAEIKPMELLEALRKMEKRGALEKMRKVRQRCGEVFRYAIVTG 182

Query: 176 RAKYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTALRT 235
           RA YNPAPDLA A+   +K +FPFL A+++P F   LA ++GSI++  AT+++  T +RT
Sbjct: 183 RADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGVRT 242

Query: 236 KELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFAG 295
           +ELR   W+++DFE ++  I A VMK ++ H+VP+S+QV+ L   L  I+K     VF G
Sbjct: 243 QELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKH-HPLVFIG 301

Query: 296 RNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHEWPADAIEVQLAHANGGS 355
           RND +KPI + ++  VI+ +GY+G  +GHGFRH  STI++E  + +  IE+QLAH +  S
Sbjct: 302 RNDPRKPISKESINQVIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKNS 361

Query: 356 VRGIYNHAQYLDKRREMMQWWADWLD 381
           +RG YNHA YLD RREMMQW+AD++D
Sbjct: 362 IRGTYNHALYLDGRREMMQWYADYID 387