Pairwise Alignments

Query, 440 a.a., short chain fatty acid transporter (NCBI) from Escherichia coli BW25113

Subject, 472 a.a., Short chain fatty acid transporter from Pseudomonas simiae WCS417

 Score =  234 bits (598), Expect = 3e-66
 Identities = 151/446 (33%), Positives = 219/446 (49%), Gaps = 29/446 (6%)

Query: 4   RISRFMTR---FVSRWLPDPLIFAMLLTLLTFVIALWLTPQTPISMVKMWGDGFWNLLAF 60
           R +RF  R   F  RW PD  +FA L  ++  V  L +    P    K +GDGFW+L+ F
Sbjct: 9   RYARFALRCSNFAERWFPDSWVFAALAVIIVAVATLGMGA-APTEAAKAFGDGFWSLIPF 67

Query: 61  GMQMALIIVTGHALASSAPVKSLLRTAASAAKTPVQGVMLVTFFGSVACVINWGFGLVVG 120
            MQMA +++ G+ +ASS P   L+   A   K     V  V     VA ++NWG  LV G
Sbjct: 68  TMQMAFVVIGGYVVASSPPAVKLIDRLARIPKNGRSAVAWVALISMVASLLNWGLSLVFG 127

Query: 121 AMFAREVARRVP-GSDYPLLIACAYIGF-LTWGGGFSGSMPLLAATPGN---PVEHIAGL 175
            +  R +ARR     DY    A AY+G    W  G S S   L A P +    +  I G+
Sbjct: 128 GLLVRALARRTDLRMDYRAAGAAAYLGLGAVWALGLSSSAAQLQANPASLPPSILSITGV 187

Query: 176 IPVGDTLFSGFNIFITVALIVVMPFITRMMMPKPSDV-----VSIDPKLLMEEADFQKQL 230
           IP  DT+F   +  + +ALIVV   I     P P+         +DP   M +      L
Sbjct: 188 IPFNDTIFLWQSGVLLLALIVVSLIIAYATAPGPNSARDAKACGVDPAFNMPK------L 241

Query: 231 PKDAPPSERLEESRILTLIIGALGIAYLAMYFSEHGFNITI---NTVNLMFMIAGLLLHK 287
                P E LE S +LT+++  L   +L   FS       I   NT N +F++ G LLH 
Sbjct: 242 QAPTRPGEWLEHSPLLTVLLALLAAGWLFHEFSTKPAISAISGLNTYNFLFIMVGALLHW 301

Query: 288 TPMAYMRAISAAARSTAGILVQFPFYAGIQLMM------EHSGLGGLITEFFINVANKDT 341
            P +++ A++ A  +T G+L+QFP Y  I  +M      +   L   I+ FF ++A+ DT
Sbjct: 302 RPRSFLDAVARAVPTTTGVLIQFPLYGSIAALMTVVKGGDGQTLAHHISLFFTSIASHDT 361

Query: 342 FPVMTFFSSALINFAVPSGGGHWVIQGPFVIPAAQALGADLGKSVMAIAYGEQWMNMAQP 401
           + ++    SA++ F +PSGGG W+I+ P+V+  A  L   LG +V      E   N+  P
Sbjct: 362 YALLMGVYSAVLGFFIPSGGGKWIIEAPYVMQVANDLQYHLGWAVQIYNAAEALPNLINP 421

Query: 402 FWALPALAIAGLGVRDIMGYCITALL 427
           F+ LP L + GL  RD++G+    LL
Sbjct: 422 FYMLPLLGVLGLKARDLIGFSFVQLL 447