Pairwise Alignments

Query, 367 a.a., outer membrane porin protein C (NCBI) from Escherichia coli BW25113

Subject, 362 a.a., outer membrane porin 1a (Ia;b;F) (NCBI) from Escherichia coli BW25113

 Score =  426 bits (1095), Expect = e-124
 Identities = 226/381 (59%), Positives = 273/381 (71%), Gaps = 34/381 (8%)

Query: 1   MKVKVLSLLVPALLVAGAANAAEVYNKDGNKLDLYGKVDGLHYFSDNKDVD-----GDQT 55
           MK  +L+++VPALLVAG ANAAE+YNKDGNK+DLYGK  GLHYFS     +     GD T
Sbjct: 2   MKRNILAVIVPALLVAGTANAAEIYNKDGNKVDLYGKAVGLHYFSKGNGENSYGGNGDMT 61

Query: 56  YMRLGFKGETQVTDQLTGYGQWEYQIQGNSAEN---ENNSWTRVAFAGLKFQDVGSFDYG 112
           Y RLGFKGETQ+   LTGYGQWEY  QGN++E    +  + TR+AFAGLK+ DVGSFDYG
Sbjct: 62  YARLGFKGETQINSDLTGYGQWEYNFQGNNSEGADAQTGNKTRLAFAGLKYADVGSFDYG 121

Query: 113 RNYGVVYDVTSWTDVLPEFGGDTYGSDNFMQQRGNGFATYRNTDFFGLVDGLNFAVQYQG 172
           RNYGVVYD   +TD+LPEFGGDT  SD+F   R  G ATYRN++FFGLVDGLNFAVQY G
Sbjct: 122 RNYGVVYDALGYTDMLPEFGGDTAYSDDFFVGRVGGVATYRNSNFFGLVDGLNFAVQYLG 181

Query: 173 KNGNPSGEGFTSGVTNNGRDALRQNGDGVGGSITYDYEGFGIGGAISSSKRTDAQNTAAY 232
           KN   +              A R NGDGVGGSI+Y+YEGFGI GA  ++ RT+ Q  A  
Sbjct: 182 KNERDT--------------ARRSNGDGVGGSISYEYEGFGIVGAYGAADRTNLQE-AQP 226

Query: 233 IGNGDRAETYTGGLKYDANNIYLAAQYTQTYNATRV-----GSLGWANKAQNFEAVAQYQ 287
           +GNG +AE +  GLKYDANNIYLAA Y +T NAT +      + G+ANK Q+   VAQYQ
Sbjct: 227 LGNGKKAEQWATGLKYDANNIYLAANYGETRNATPITNKFTNTSGFANKTQDVLLVAQYQ 286

Query: 288 FDFGLRPSLAYLQSKGKNLGRGYDDEDILKYVDVGATYYFNKNMSTYVDYKINLLD-DNQ 346
           FDFGLRPS+AY +SK K++  G  D D++ Y +VGATYYFNKNMSTYVDY IN +D DN+
Sbjct: 287 FDFGLRPSIAYTKSKAKDV-EGIGDVDLVNYFEVGATYYFNKNMSTYVDYIINQIDSDNK 345

Query: 347 FTRDAGINTDNIVALGLVYQF 367
                G+ +D+ VA+G+VYQF
Sbjct: 346 L----GVGSDDTVAVGIVYQF 362