Pairwise Alignments

Query, 1040 a.a., multidrug efflux system, subunit B (NCBI) from Escherichia coli BW25113

Subject, 1033 a.a., Multidrug resistance protein MdtB from Pseudomonas sp. DMC3

 Score = 1286 bits (3327), Expect = 0.0
 Identities = 668/1014 (65%), Positives = 819/1014 (80%), Gaps = 1/1014 (0%)

Query: 13   SRLFIMRPVATTLLMVAILLAGIIGYRALPVSALPEVDYPTIQVVTLYPGASPDVMTSAV 72
            SRLFI+RPVATTL M+AI+LAG+I YR LPVSALP+VDYPTI+V+TLYPGASPDVMTSAV
Sbjct: 4    SRLFILRPVATTLSMLAIVLAGLIAYRLLPVSALPQVDYPTIRVMTLYPGASPDVMTSAV 63

Query: 73   TAPLERQFGQMSGLKQMSSQSSGGASVITLQFQLTLPLDVAEQEVQAAINAATNLLPSDL 132
            TAPLERQFGQM GL QM+S SSGGASV+TL+F L + +DVAEQ+VQAAINAATNLLP+DL
Sbjct: 64   TAPLERQFGQMPGLTQMASTSSGGASVLTLRFSLDINMDVAEQQVQAAINAATNLLPTDL 123

Query: 133  PNPPVYSKVNPADPPIMTLAVTSTAMPMTQVEDMVETRVAQKISQISGVGLVTLSGGQRP 192
            P PPVY+KVNPAD P++TLA+TS  M + ++ D+V+TR+AQKI+QISGVG+V+++GGQR 
Sbjct: 124  PAPPVYNKVNPADTPVLTLAITSKTMLLPKLNDLVDTRMAQKIAQISGVGMVSIAGGQRQ 183

Query: 193  AVRVKLNAQAIAALGLTSETVRTAITGANVNSAKGSLDGPSRAVTLSANDQMQSAEEYRQ 252
            AVR+K+N +A+AA  L    VRT I  +NVN  KG+ DGP+R   L ANDQ+ S E+Y  
Sbjct: 184  AVRIKVNPEALAANSLNLSDVRTLIGASNVNQPKGNFDGPTRVSMLDANDQLTSPEDYAN 243

Query: 253  LIIAYQNGAPIRLGDVATVEQGAENSWLGAWANKEQAIVMNVQRQPGANIISTADSIRQM 312
            LI+ Y+NGAP+RL DVA +  GAEN  L AWAN+ QA+++N+QRQPGAN+I   D I+ +
Sbjct: 244  LILTYKNGAPLRLKDVAEIVDGAENERLAAWANQNQAVLLNIQRQPGANVIEVVDRIKAL 303

Query: 313  LPQLTESLPKSVKVTVLSDRTTNIRASVDDTQFELMMAIALVVMIIYLFLRNIPATIIPG 372
            LP +T++LP  + VTVL+DRT  IRASV D Q EL++AIALVVM+ +LFLR   ATIIP 
Sbjct: 304  LPSITDNLPAGLDVTVLTDRTQTIRASVTDVQHELLIAIALVVMVTFLFLRRASATIIPS 363

Query: 373  VAVPLSLIGTFAVMVFLDFSINNLTLMALTIATGFVVDDAIVVIENISRYIEKGEKPLAA 432
            VAVPLSLIGTF VM    FS+NNLTLMALTIATGFVVDDAIV++ENISR+IE+G+ P+ A
Sbjct: 364  VAVPLSLIGTFGVMYLAGFSVNNLTLMALTIATGFVVDDAIVMLENISRFIEEGDSPMQA 423

Query: 433  ALKGAGEIGFTIISLTFSLIAVLIPLLFMGDIVGRLFREFAITLAVAILISAVVSLTLTP 492
            ALKGA +IGFT+ISLT SLIAVLIPLLFM D+VGRLFREFAITLAVAILIS VVSLTLTP
Sbjct: 424  ALKGAKQIGFTLISLTLSLIAVLIPLLFMADVVGRLFREFAITLAVAILISLVVSLTLTP 483

Query: 493  MMCARMLSQE-SLRKQNRFSRASEKMFDRIIAAYGRGLAKVLNHPWLTLSVALSTLLLSV 551
            MMCAR+L +E    +Q RF RAS    D +I  YGR L  VL H  LTL VA+ TL L+V
Sbjct: 484  MMCARLLKREPQEHEQGRFYRASGAFIDWMINEYGRMLRWVLKHQPLTLLVAIGTLALTV 543

Query: 552  LLWVFIPKGFFPVQDNGIIQGTLQAPQSSSFANMAQRQRQVADVILQDPAVQSLTSFVGV 611
             L+V +PKGFFPVQD G+IQG  +APQS SFA M +RQ+Q+A +IL+DPAVQSL+S++GV
Sbjct: 544  FLYVIVPKGFFPVQDTGVIQGISEAPQSISFAAMGERQQQLAKIILEDPAVQSLSSYIGV 603

Query: 612  DGTNPSLNSARLQINLKPLDERDDRVQKVIARLQTAVDKVPGVDLFLQPTQDLTIDTQVS 671
            DG N +LNS RL INLKP  ERD    +VI+RLQ  +DK+ G+ LF+QP QDLTI+ +VS
Sbjct: 604  DGDNATLNSGRLLINLKPHGERDLTASEVISRLQPQLDKLVGIRLFMQPVQDLTIEDRVS 663

Query: 672  RTQYQFTLQATSLDALSTWVPQLMEKLQQLPQLSDVSSDWQDKGLVAYVNVDRDSASRLG 731
            RTQYQF++ +   + LS W  +L+E L Q P+L+DV+SD QDKGL  Y+ +DRD+ASRLG
Sbjct: 664  RTQYQFSMSSPDSELLSQWSGRLVEALAQRPELTDVASDLQDKGLQVYLVIDRDAASRLG 723

Query: 732  ISMADVDNALYNAFGQRLISTIYTQANQYRVVLEHNTENTPGLAALDTIRLTSSDGGVVP 791
            +S+ ++ +ALY+AFGQR ISTIYTQA+QYRVVL+       G  ALD I + ++DG  V 
Sbjct: 724  VSVVNITDALYDAFGQRQISTIYTQASQYRVVLQAQAGEKIGPQALDQIHVKTTDGAQVR 783

Query: 792  LSSIAKIEQRFAPLSINHLDQFPVTTISFNVPDNYSLGDAVQAIMDTEKTLNLPVDITTQ 851
            LSS+A +E+R A L+I H+ QFP   +SFN+    +LG AV  I   ++ + +PV + TQ
Sbjct: 784  LSSLAHVEERQAQLAITHIGQFPAVMMSFNLAPGVALGHAVDIIEQVQQDIGMPVGVQTQ 843

Query: 852  FQGSTLAFQSALGSTVWLIVAAVVAMYIVLGILYESFIHPITILSTLPTAGVGALLALLI 911
            FQG+  AFQ++L ST+ LI+AAVV MYIVLG+LYES+IHPITILSTLP+A VGALLALL+
Sbjct: 844  FQGAAQAFQASLSSTLLLILAAVVTMYIVLGVLYESYIHPITILSTLPSAAVGALLALLL 903

Query: 912  AGSELDVIAIIGIILLIGIVKKNAIMMIDFALAAEREQGMSPREAIYQACLLRFRPILMT 971
            +G++L +IAIIGIILLIGIVKKNAIMMIDFAL AER QGM+P EAIYQA LLRFRPILMT
Sbjct: 904  SGNDLGMIAIIGIILLIGIVKKNAIMMIDFALDAERTQGMAPAEAIYQAALLRFRPILMT 963

Query: 972  TLAALLGALPLMLSTGVGAELRRPLGIGMVGGLIVSQVLTLFTTPVIYLLFDRL 1025
            TLAAL GA+PLML+TG GAELR+PLG+ MVGGL+VSQVLTLFTTPVIYL FDRL
Sbjct: 964  TLAALFGAVPLMLATGSGAELRQPLGLVMVGGLLVSQVLTLFTTPVIYLYFDRL 1017