Pairwise Alignments

Query, 245 a.a., flagellar biosynthesis protein P (NCBI) from Escherichia coli BW25113

Subject, 215 a.a., Type III secretion inner membrane protein (YscR,SpaR,HrcR,EscR,homologous to flagellar export components) from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  148 bits (374), Expect = 7e-41
 Identities = 83/212 (39%), Positives = 123/212 (58%), Gaps = 13/212 (6%)

Query: 41  PVQTLVFITSLTFIPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFI 100
           P+Q +  +  L+ +P I++M TSF ++ +VF +LRNALG    PPN  L GLAL L+ FI
Sbjct: 7   PLQLIGILFLLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGLALVLSLFI 66

Query: 101 MSPVIDKIYVDAYQPFSEEKISM--QEALEKGAQPLREFMLRQTREADLGLFARLANTGP 158
           M P +  +  + + P           E   K   P R+F+ + + E +   F  L     
Sbjct: 67  MGPTLLAVK-ERWHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKR-- 123

Query: 159 LQGPEAVPMRI-------LLPAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMM 211
              PE +  +I       L+PA+  S+L  AF+IG  I++PFL IDL+I+++L+A+GMMM
Sbjct: 124 -TWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMM 182

Query: 212 VPPATIALPFKLMLFVLVDGWQLLVGSLAQSF 243
           V P TI+LPFKL++F+L  GW L +  L QSF
Sbjct: 183 VSPMTISLPFKLLIFLLAGGWDLTLAQLVQSF 214