Pairwise Alignments

Query, 334 a.a., flagellar motor switch protein M (NCBI) from Escherichia coli BW25113

Subject, 322 a.a., flagellar synthesis, switching and energizing component from Pseudomonas putida KT2440

 Score =  248 bits (633), Expect = 1e-70
 Identities = 135/320 (42%), Positives = 197/320 (61%), Gaps = 6/320 (1%)

Query: 5   ILSQAEIDALLNGDSEVKDEPTASVSGESDIRPYDPNTQRRVVRERLQALEIINERFARH 64
           +LSQ EIDALL+G  +   + T S S    I+ YD  +Q R+VR R+  LE+INERFAR+
Sbjct: 6   LLSQDEIDALLHGVDDGLVQ-TESASEPGSIKSYDLTSQDRIVRGRMPTLEMINERFARY 64

Query: 65  FRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVF 124
            R+ +FNLLRRS D+ VG +++  + E+  +L VPT+LNL+ +KPLRGT L +    LVF
Sbjct: 65  TRISMFNLLRRSADVAVGGVQVMKFGEYVHSLYVPTSLNLVKIKPLRGTSLFILDAKLVF 124

Query: 125 IAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYVRSEM 184
             VDN FGGDGR   K+EGREFT TE RV+  +L        +AW+AI P+  EY+ SE+
Sbjct: 125 KLVDNFFGGDGRH-AKIEGREFTPTELRVVRMVLDQCFVDLKEAWQAIMPVSFEYMNSEV 183

Query: 185 QVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRNEDQ 244
                NI   P++ VV + FH+E+    G+ ++ +P+SMIEP+RE+L      +  ++D+
Sbjct: 184 NPAMANI-VGPSEAVVVSTFHIELDGGGGDLHVTMPYSMIEPVREMLDAGFQSDLDDQDE 242

Query: 245 NWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIEKPDRIIAHVDGVPVLTS 304
            W   L   V    + + A  A   L+L  IL + PGDV+P+E P+ ++   +GVP   +
Sbjct: 243 RWVKALREDVLDVAVPMTATVARRQLKLRDILHMQPGDVIPVELPEHLVLRANGVPAFKA 302

Query: 305 QYGTLNGQYALRIEHLINPI 324
           + G+  G  AL+I   I+PI
Sbjct: 303 RLGSHKGNLALQI---IDPI 319