Pairwise Alignments

Query, 188 a.a., orf, hypothetical protein (VIMSS) from Escherichia coli BW25113

Subject, 179 a.a., Predicted membrane protein from Kangiella aquimarina DSM 16071

 Score =  124 bits (311), Expect = 1e-33
 Identities = 72/179 (40%), Positives = 112/179 (62%), Gaps = 9/179 (5%)

Query: 7   VLLAFGMSMDAFAASIGKGATLHKPKFSEALRTGLIFGAVETLTPLIGW--GMGMLASRF 64
           ++LA  +SMDAFA SIG G+         A++  + FG  + L PLIG+  G G+L   +
Sbjct: 5   IILAIALSMDAFAVSIGLGSKPVASHRKLAIQAAVYFGLFQGLMPLIGYLGGKGLLG--W 62

Query: 65  VLEWNHWIAFVLLIFLGGRMIIEGF-RGADDEDEEPRRRHGFWLLVTTAIATSLDAMAVG 123
           +  +  WIAF+LL+F+GG+MI E F  G +D+  +  +R    +++T AIATS+DAMA G
Sbjct: 63  IEVYAPWIAFLLLLFIGGKMIFEAFSEGIEDDIAQITQR----VMLTLAIATSIDAMAAG 118

Query: 124 VGLAFLQVNIIATALAIGCATLIMSTLGMMVGRFIGSIIGKKAEILGGLVLIGIGVQIL 182
             L  L  N     L IG  T++MST+G+ +G+  G+ +  KAE+LGG++LI I ++++
Sbjct: 119 FALNLLDANPFVACLIIGLITMLMSTIGVYIGKRSGTWLESKAELLGGVILILIAIKLV 177



 Score = 29.6 bits (65), Expect = 3e-05
 Identities = 24/84 (28%), Positives = 41/84 (48%), Gaps = 5/84 (5%)

Query: 108 LVTTAIATSLDAMAVGVGLAFLQVN-----IIATALAIGCATLIMSTLGMMVGRFIGSII 162
           ++  AIA S+DA AV +GL    V       I  A+  G    +M  +G + G+ +   I
Sbjct: 4   VIILAIALSMDAFAVSIGLGSKPVASHRKLAIQAAVYFGLFQGLMPLIGYLGGKGLLGWI 63

Query: 163 GKKAEILGGLVLIGIGVQILWTHF 186
              A  +  L+L+ IG ++++  F
Sbjct: 64  EVYAPWIAFLLLLFIGGKMIFEAF 87