Pairwise Alignments

Query, 417 a.a., predicted transporter (NCBI) from Escherichia coli BW25113

Subject, 405 a.a., putative transport protein (VIMSS) from Escherichia coli BW25113

 Score = 75.5 bits (184), Expect = 3e-18
 Identities = 53/197 (26%), Positives = 97/197 (49%), Gaps = 10/197 (5%)

Query: 40  ALFSAGLA------TFALLYCVQPILPVLSQEFGLTPANSSISLSISTAMLAIGLLFTGP 93
           ALFSA L        F +++    IL ++  + G+T   +++  +++     IG  F G 
Sbjct: 16  ALFSAWLGYVFDGFDFMMIFY---ILHIIKADLGITDIQATLIGTVAFIARPIGGGFFGA 72

Query: 94  LSDAIGRKPVMVTALLLASICTLLSTMMTSWHGILIMRALIGLSLSGVAAVGMTYLSEEI 153
           ++D  GRKP+M+ A+ + S+ T LS + T+ + + + R ++GL +SG  A   TY  E  
Sbjct: 73  MADKYGRKPMMMWAIFIYSVGTGLSGIATNLYMLAVCRFIVGLGMSGEYACASTYAVESW 132

Query: 154 HPSFVAFSMGLYISGNSIGGMSGRLISGVFTDFFNWRIALAAIGCFALASALMFWKILPE 213
             +  + +    +SG S+G +    I   F + + WR +   IG   +   L   K  PE
Sbjct: 133 PKNLQSKASAFLVSGFSVGNIIAAQIIPQFAEVYGWRNSF-FIGLLPVLLVLWIRKSAPE 191

Query: 214 SRHFRPTSLRPKTLFIN 230
           S+ +     + K+ F++
Sbjct: 192 SQEWIEDKYKDKSTFLS 208



 Score = 40.8 bits (94), Expect = 7e-08
 Identities = 28/114 (24%), Positives = 57/114 (50%), Gaps = 3/114 (2%)

Query: 295 GTMTTRYGRGPVMLFSTGVMLFGL-LMTLFSSLWLIFAGMLLFSAGFFAAHSVASSW-IG 352
           G M  +YGR P+M+++  +   G  L  + ++L+++     +   G    ++ AS++ + 
Sbjct: 71  GAMADKYGRKPMMMWAIFIYSVGTGLSGIATNLYMLAVCRFIVGLGMSGEYACASTYAVE 130

Query: 353 PRAKRAKGQASSLYLFSYYLGSSIAGTLGGVFWHNYGWNGVGAFIALMLVIALL 406
              K  + +AS+  +  + +G+ IA  +   F   YGW     FI L+ V+ +L
Sbjct: 131 SWPKNLQSKASAFLVSGFSVGNIIAAQIIPQFAEVYGWRN-SFFIGLLPVLLVL 183