Pairwise Alignments

Query, 406 a.a., DNA-binding transcriptional repressor (NCBI) from Escherichia coli BW25113

Subject, 397 a.a., putative DNA-binding transcriptional regulator from Escherichia coli BL21

 Score = 98.2 bits (243), Expect = 4e-25
 Identities = 78/329 (23%), Positives = 157/329 (47%), Gaps = 7/329 (2%)

Query: 12  QIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEAGNR 71
           QI+  N   +  L+ +    ++  L+RLAQ++  +++ I++E+     V  ++  E+  R
Sbjct: 9   QIRHNNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNID-DESQTR 67

Query: 72  GRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLPLLDRIISH 131
           G  +   ++  E    L L ++   I      +++  +  + +   L+ D P    ++S 
Sbjct: 68  GHSSGTWLIAPEGDWTLCLNVTPTSIEC---QVANACLSPKGEFEYLQIDAPTPQALLSE 124

Query: 132 IDQFFIRHQKKL-ERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGVPV 190
           I++ + RH+K   +R  ++A+ + G +D   G+   MP       + +   LE+  G+ V
Sbjct: 125 IEKCWHRHRKLWPDRTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGIRV 184

Query: 191 YIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQV 250
            + +D     +AE     S+  RD   + +D+ +G+  + +  +         +IGHT V
Sbjct: 185 MVDNDCVMLALAEKWQNNSQ-ERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTIV 243

Query: 251 DPYGKRCYCGNHGCLETIASVDSILELAQLRL-NQSMSSMLHGQPLTVDSLCQAALRGDL 309
           +P G  C CG +GCLET+AS+ ++ + A++ L +Q +S+ L  + LT   L  A   G+ 
Sbjct: 244 NPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAWQSGEP 303

Query: 310 LAKDIITGVGAHVGRILAIMVNLFNPQKI 338
                +      +G  L   +N+ N  +I
Sbjct: 304 WITSWVDRSANAIGLSLYNFLNILNINQI 332