Pairwise Alignments

Query, 418 a.a., putative chloride channel (VIMSS) from Escherichia coli BW25113

Subject, 473 a.a., H(+)/Cl(-) exchange transporter ClcA from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  125 bits (315), Expect = 2e-33
 Identities = 115/425 (27%), Positives = 194/425 (45%), Gaps = 34/425 (8%)

Query: 5   LLIATVVGILAAFAVAGFRHAMLLLEWLFLNNDSGSLVNAATNLSPWRRLLTPALGGLAA 64
           L +A VVG L       F  A+  ++    N   G+LV  A +      LL P    L+A
Sbjct: 36  LFMAAVVGTLTGLVGVAFEKAVSWVQ----NMRIGALVQVADHAF----LLWPLAFILSA 87

Query: 65  GLLLMGW---QKFTQQRPHAPTDYME-ALQTDGQFDYAASL-VKSLASLLVVTSGSAIGR 119
            L ++G+   +KF  +   +    +E AL+      +   L VK +  +  + +G  +GR
Sbjct: 88  LLAMVGYFLVRKFAPEAGGSGIPEIEGALEELRPVRWWRVLPVKFIGGMGTLGAGMVLGR 147

Query: 120 EGAMILLAALAASCFAQRFTPR--QEWKLWIACGAAAGMAAAYRAPLAGSLFIAEVLFGT 177
           EG  + +           F  R  +     +A GAAAG++AA+ APLAG LFI E +   
Sbjct: 148 EGPTVQIGGNLGRMVLDVFRMRSAEARHTLLATGAAAGLSAAFNAPLAGILFIIEEMRPQ 207

Query: 178 MM--LASLGPVIISAVVALLVSNLINHSDALLYNVQLSVTVQARDYALIISTGVLAGLCG 235
               L S+  V    +++ +V  + N    ++   +LS         L +  G++ G  G
Sbjct: 208 FRYNLISIKAVFTGVIMSSIVFRIFNGEAPIIEVGKLS-DAPVNTLWLYLILGIIFGCVG 266

Query: 236 PLLLTLM-------NACHRGFVSLKLAPPWQL---ALGGLIVGLLSLFTPAVWGNGYSTV 285
           P+  +L+          H G +       W L   A+GGL  G+L L  PA  G G++ +
Sbjct: 267 PVFNSLVLRTQDMFQRFHGGEIK-----KWVLMGGAIGGLC-GILGLIEPAAAGGGFNLI 320

Query: 286 QSFLTAPPLLMIIAGIFLCKLCAVLASSGSGAPGGVFTPTLFIGLAIGMLYGRSLGLWFP 345
                    + ++  IF+ ++   L    SGAPGG+F P L +G  +G  +G +  + FP
Sbjct: 321 PIAAAGNFSVGLLLFIFITRVVTTLLCFSSGAPGGIFAPMLALGTLLGTAFGMAAAVLFP 380

Query: 346 DGEEITLLLGLTGMATLLAATTHAPIMSTLMICEMTGEYQLLPGLLIACVIASVISRTLH 405
                     + GM  L+AA+  AP+   +++ EMT  YQL+  ++I C+ A+++++ L 
Sbjct: 381 QYHLEAGTFAIAGMGALMAASVRAPLTGIVLVLEMTDNYQLILPMIITCLGATLLAQFLG 440

Query: 406 RDSIY 410
              +Y
Sbjct: 441 GKPLY 445