Pairwise Alignments

Query, 418 a.a., putative chloride channel (VIMSS) from Escherichia coli BW25113

Subject, 593 a.a., chloride channel protein from Agrobacterium fabrum C58

 Score =  139 bits (349), Expect = 3e-37
 Identities = 109/400 (27%), Positives = 194/400 (48%), Gaps = 13/400 (3%)

Query: 7   IATVVGILAAFAVAGFRHAMLLLEWLFLNNDSGSLVNAATNLSPWRRLLTPALGGLAAGL 66
           +A ++G+ A   VA        L  L    +  S    +++LS    L  P +GG+  GL
Sbjct: 37  LAVLIGVAAGLLVALIGALSTALHILVFGVERLS----SSDLSGRIVLFGPIIGGMLLGL 92

Query: 67  LLMGWQKFTQQRPHAPTDYMEALQTDGQFDYAASLVKSLASLLVVTSGSAIGREGAMILL 126
           ++    K T+++P        AL   G+     S++  + +++    G+++G E     +
Sbjct: 93  IIFILSK-TRKKPMIDPIEANALH-GGRLSLTDSIIVCVQNIVSNGFGASVGLEAGYTQI 150

Query: 127 AALAASCFAQRFTPRQ-EWKLWIACGAAAGMAAAYRAPLAGSLFIAEVLFGTMMLASLGP 185
           A+  AS    +   R+ + ++ + CGAA  +AAA+ APL G+ +  E++ GT  + +L P
Sbjct: 151 ASGVASKIGIKLKLRRGDMRILVGCGAAGAIAAAFNAPLTGAFYAIELIIGTYTVVTLAP 210

Query: 186 VIISAVVALLVSNLINHSDALLYNVQLSVTVQARDYALIISTGVLAGLCGPLLLTLMNAC 245
           +I+SA+VA  V  LI     L  ++  +  V   DY   I  GV+    G +L+  ++  
Sbjct: 211 LIVSALVATTVIGLIG-GHGLSIDIVDASRVTPADYVPAIFLGVVCAAIGIVLMQAVSFI 269

Query: 246 HRGFVSLKLAPPWQL--ALGGLIVGLLSLFTPAVWGNGYSTVQSFLTAPPLLMIIAGIFL 303
                + K A P  L   LGG+ VG L+L +P V  +G+  +   + A   +  +AG+F+
Sbjct: 270 EE--TARKSAIPGWLRPTLGGVAVGGLALISPQVLSSGHGALHLNIDAELTIYGLAGLFM 327

Query: 304 CKLCAVLASSGSGAPGGVFTPTLFIGLAIGMLYGRSLGLWFPDGEEITLLLGLTGMATLL 363
            K  A   S GS   GG+F  +LF+G  +G ++      +   G    ++  + GM+   
Sbjct: 328 LKAAASAISIGSNFRGGLFFASLFMGSLLGKIFA-LCAPYIGYGSTAPIVYAVIGMSAFA 386

Query: 364 AATTHAPIMSTLMICEMTGEYQLLPGLLIACVIASVISRT 403
           AA    P+  T +  E+TG++Q+   +L A +  S++ RT
Sbjct: 387 AAIIGGPLTMTFLALELTGDFQITALVLAAVITTSLVVRT 426