Pairwise Alignments

Query, 308 a.a., D-ala-D-ala transporter subunit (NCBI) from Escherichia coli BW25113

Subject, 322 a.a., dipeptide ABC transporter, binding subunit from Pseudomonas putida KT2440

 Score =  245 bits (626), Expect = 9e-70
 Identities = 130/290 (44%), Positives = 182/290 (62%), Gaps = 15/290 (5%)

Query: 29  VHAINGIDLQIRRGETLGIVGESGCGKSTLAQLLMGMLQPSHGQYIRSGSQ--------- 79
           V A+NG+  ++  G+TL +VGESGCGKSTLA+ L  + +PS G    +G++         
Sbjct: 27  VRALNGVSFELEAGKTLAVVGESGCGKSTLARALTLIEEPSSGSLQIAGTEVKGASKAER 86

Query: 80  ----RIMQMVFQDPLSSLNPRLPVWRIITEPLWIAKRSSEQQRRALAEELAVQVGIRPEY 135
               R +QMVFQ P +SLNPR  +   + EPL I    S+ +RR   +++  QVG+RPE+
Sbjct: 87  KQLRRDVQMVFQSPYASLNPRQKIGDQLAEPLLINTSLSKAERRDKVQKMMEQVGLRPEH 146

Query: 136 LDRLPHAFSGGQRQRIAIARALSSQPDVIVLDEPTSALDISVQAQILNLLVTLQENHGLT 195
             R PH FSGGQRQRIA+ARA+  QP V+V DEPTSALD+S+QAQ+LNL + LQ+     
Sbjct: 147 YQRYPHMFSGGQRQRIALARAMMLQPKVLVADEPTSALDVSIQAQVLNLFMDLQKEFNTA 206

Query: 196 YVLISHNVSVIRHMSDRVAVMYLGQIVELGDAQQVLTAPAHPYTRLLLDSLPAI-DKPLE 254
           YV ISHN++V+RH++D+V VMYLG+  E+G  + +   P HPYT+ LL + PAI   PL+
Sbjct: 207 YVFISHNLAVVRHVADQVLVMYLGRPAEMGPKEDIYAKPLHPYTQALLSATPAIHPDPLK 266

Query: 255 EEWALRKTDLPGNRTLPQGCFFYERCPLATHGCEVRQSLAIREDGRELRC 304
            +  +   +LP     P GC F++RCP AT  C        +   R++ C
Sbjct: 267 PKIRI-VGELPNPLNPPDGCAFHKRCPYATERCAKEVPALRQVSTRQVAC 315