Pairwise Alignments

Query, 308 a.a., D-ala-D-ala transporter subunit (NCBI) from Escherichia coli BW25113

Subject, 334 a.a., Oligopeptide transport ATP-binding protein OppF (TC 3.A.1.5.1) from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  239 bits (611), Expect = 5e-68
 Identities = 127/301 (42%), Positives = 189/301 (62%), Gaps = 18/301 (5%)

Query: 5   LLTLRDVHINFPAR--KNWLGKTTEHVHAINGIDLQIRRGETLGIVGESGCGKSTLAQLL 62
           LL + D+ ++F  +  K W  +  + + A++G+ L++  GETLG+VGESGCGKST A+ +
Sbjct: 11  LLEIADLKVHFDIKEGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAI 70

Query: 63  MGMLQPSHGQYIRSGSQRI-------------MQMVFQDPLSSLNPRLPVWRIITEPL-W 108
           +G+++ + G+    G   +             +QM+FQDPL+SLNPR+ +  II EPL  
Sbjct: 71  IGLVKATDGKVAWLGKDLLGMKADEWREVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRT 130

Query: 109 IAKRSSEQQRRALAEELAVQVGIRPEYLDRLPHAFSGGQRQRIAIARALSSQPDVIVLDE 168
              + S Q  R   + + ++VG+ P  ++R PH FSGGQ QRI IARAL  +P +I+ DE
Sbjct: 131 YHPKLSRQDVRDRVKAMMLKVGLLPNLINRYPHEFSGGQCQRIGIARALILEPKLIICDE 190

Query: 169 PTSALDISVQAQILNLLVTLQENHGLTYVLISHNVSVIRHMSDRVAVMYLGQIVELGDAQ 228
           P SALD+S+QAQ++NLL  LQ   GL+ + I+H+++V++H+SDRV VMYLG  VELG   
Sbjct: 191 PVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMYLGHAVELGTYD 250

Query: 229 QVLTAPAHPYTRLLLDSLPAIDKPLE--EEWALRKTDLPGNRTLPQGCFFYERCPLATHG 286
           +V   P HPYT+ L+ ++P  D  LE  ++  L + +LP     P GC F  RCP+A   
Sbjct: 251 EVYHNPLHPYTKALMSAVPIPDPDLERNKKIQLLEGELPSPINPPSGCVFRTRCPIAGPE 310

Query: 287 C 287
           C
Sbjct: 311 C 311