Pairwise Alignments

Query, 1300 a.a., ATP-dependent helicase (RefSeq) from Escherichia coli BW25113

Subject, 1300 a.a., ATP-dependent RNA helicase HrpA (EC 3.6.4.13) from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score = 2487 bits (6446), Expect = 0.0
 Identities = 1240/1299 (95%), Positives = 1274/1299 (98%)

Query: 1    MTEQQKLTFTALQQRLDSLMLRDRLRFSRRLHGVKKVKNPDAQQAIFQEMAKEIDQAAGK 60
            MTEQ  LT   LQQRLD+LMLRD+ RF+RRLHGVKKVKNPDAQQAIFQ MAKEI+QAA +
Sbjct: 1    MTEQSTLTLQVLQQRLDALMLRDKQRFARRLHGVKKVKNPDAQQAIFQTMAKEIEQAAAQ 60

Query: 61   VLLREAARPEITYPDNLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICMELGRG 120
            V LREAARP ITYP NLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICMELGRG
Sbjct: 61   VALREAARPSITYPQNLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICMELGRG 120

Query: 121  IKGLIGHTQPRRLAARTVANRIAEELKTEPGGCIGYKVRFSDHVSDNTMVKLMTDGILLA 180
            IKGLIGHTQPRRLAARTVANRIAEEL+TEPGGCIGYKVRFSDHVS NTMVKLMTDGILLA
Sbjct: 121  IKGLIGHTQPRRLAARTVANRIAEELQTEPGGCIGYKVRFSDHVSSNTMVKLMTDGILLA 180

Query: 181  EIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSRH 240
            EIQQDRLLMQYDT+IIDEAHERSLNIDFLLGYLKELLPRRPDLK+IITSATIDPERFSRH
Sbjct: 181  EIQQDRLLMQYDTLIIDEAHERSLNIDFLLGYLKELLPRRPDLKVIITSATIDPERFSRH 240

Query: 241  FNNAPIIEVSGRTYPVEVRYRPIVEEADDTERDQLQAIFDAVDELSQESHGDILIFMSGE 300
            FNNAPIIEVSGRTYPVEVRYRPIVEEADDTERDQLQAIFDAVDEL +ES GDILIFMSGE
Sbjct: 241  FNNAPIIEVSGRTYPVEVRYRPIVEEADDTERDQLQAIFDAVDELGRESPGDILIFMSGE 300

Query: 301  REIRDTADALNKLNLRHTEILPLYARLSNSEQNRVFQSHSGRRIVLATNVAETSLTVPGI 360
            REIRDTADALNKLNLRHTE+LPLYARLSNSEQNRVFQSHSGRRIVLATNVAETSLTVPGI
Sbjct: 301  REIRDTADALNKLNLRHTEVLPLYARLSNSEQNRVFQSHSGRRIVLATNVAETSLTVPGI 360

Query: 361  KYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGICIRLYSEDDFLSR 420
            KYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGICIRLYSEDDFLSR
Sbjct: 361  KYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGICIRLYSEDDFLSR 420

Query: 421  PEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRLLEELGAITTDEQ 480
            PEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRLLEELGAIT DEQ
Sbjct: 421  PEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRLLEELGAITADEQ 480

Query: 481  ASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQDPRERPMDKQQA 540
             +AYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQDPRERP+DKQQA
Sbjct: 481  QTAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQDPRERPVDKQQA 540

Query: 541  SDEKHRRFHDKESDFLAFVNLWNYLGEQQKALSSNAFRRLCRTDYLNYLRVREWQDIYTQ 600
            SDEKHRRFHDKESDFLAFVNLWNYLGEQQKALSSN FRRLCRTDYLNYLRVREWQDIYTQ
Sbjct: 541  SDEKHRRFHDKESDFLAFVNLWNYLGEQQKALSSNQFRRLCRTDYLNYLRVREWQDIYTQ 600

Query: 601  LRQVVKELGIPVNSEPAEYREIHIALLTGLLSHIGMKDADKQEYTGARNARFSIFPGSGL 660
            LRQVVKELGIPVNSEPAEYREIH+ALLTGLLSHIGMKDADKQEYTGARNARFSIFPGSGL
Sbjct: 601  LRQVVKELGIPVNSEPAEYREIHVALLTGLLSHIGMKDADKQEYTGARNARFSIFPGSGL 660

Query: 661  FKKPPKWVMVAELVETSRLWGRIAARIDPEWVEPVAQHLIKRTYSEPHWERAQGAVMATE 720
            FKKPPKW MVAELVETSRLWGRIAARI+PEWVEPVAQHLIKR+YSEPHWERAQGAVMATE
Sbjct: 661  FKKPPKWTMVAELVETSRLWGRIAARIEPEWVEPVAQHLIKRSYSEPHWERAQGAVMATE 720

Query: 721  KVTVYGLPIVAARKVNYSQIDPALCRELFIRHALVEGDWQTRHAFFRENLKLRAEVEELE 780
            KVTVYGLPIVAARKVNYSQIDPALCRELFIRHALVEGDWQTRHAFFRENLKLRAEVEELE
Sbjct: 721  KVTVYGLPIVAARKVNYSQIDPALCRELFIRHALVEGDWQTRHAFFRENLKLRAEVEELE 780

Query: 781  HKSRRRDILVDDETLFEFYDQRISHDVISARHFDSWWKKVSRETPDLLNFEKSMLIKEGA 840
            HKSRRRDILVDD+TLFEFYDQRISHDVISARHFDSWWKK+SRETPDLLNFEKSMLIKEGA
Sbjct: 781  HKSRRRDILVDDDTLFEFYDQRISHDVISARHFDSWWKKISRETPDLLNFEKSMLIKEGA 840

Query: 841  EKISKLDYPNFWHQGNLKLRLSYQFEPGADADGVTVHIPLPLLNQVEESGFEWQIPGLRR 900
            EKISKLDYPNFWHQGNLKLRLSYQFEPGADADGVTVHIPLPLLNQV+ESGFEWQIPGLRR
Sbjct: 841  EKISKLDYPNFWHQGNLKLRLSYQFEPGADADGVTVHIPLPLLNQVDESGFEWQIPGLRR 900

Query: 901  ELVIALIKSLPKPVRRNFVPAPNYAEAFLGRVKPLELPLLDSLERELRRMTGVTVDREDW 960
            ELVIALIKSLPKPVRRNFVPAPNYAEAFLGRV PLELPLLD+LERELRRMTGVTVDREDW
Sbjct: 901  ELVIALIKSLPKPVRRNFVPAPNYAEAFLGRVTPLELPLLDALERELRRMTGVTVDREDW 960

Query: 961  HWDQVPDHLKITFRVVDDKNKKLKEGRSLQDLKDALKGKVQETLSAVADDGIEQSGLHIW 1020
            HWDQVP+HLKITFRVV+DKNKKL+EGRSL +LK+ALKGKVQETLSAVADDGIEQSGLHIW
Sbjct: 961  HWDQVPEHLKITFRVVNDKNKKLQEGRSLAELKNALKGKVQETLSAVADDGIEQSGLHIW 1020

Query: 1021 SFGQLPESYEQKRGNYKVKAWPALVDERDSVAIKLFDNPLEQKQAMWNGLRRLLLLNIPS 1080
            SFG+LPESYEQKRGNYKVKAWPALVDERDSVAIKLFDNPLEQ+QAMW GLRRLLLLNIPS
Sbjct: 1021 SFGELPESYEQKRGNYKVKAWPALVDERDSVAIKLFDNPLEQQQAMWCGLRRLLLLNIPS 1080

Query: 1081 PIKYLHEKLPNKAKLGLYFNPYGKVLELIDDCISCGVDKLIDANGGPVWTEEGFAALHEK 1140
            PIKYLHEKLPNKAKLGLYFNPYGKVLELIDDCI+CGVDKLIDANGGPVW+E GF ALHEK
Sbjct: 1081 PIKYLHEKLPNKAKLGLYFNPYGKVLELIDDCIACGVDKLIDANGGPVWSEAGFTALHEK 1140

Query: 1141 VRAELNDTVVDIAKQVEQILTAVFNINKRLKGRVDMTMALGLSDIKAQMGGLVYRGFVTG 1200
            VRAELNDTVVDIAKQVE+ILT VFNINKRLKGRVDM+MALGLSDIKAQM GLVYRGFVTG
Sbjct: 1141 VRAELNDTVVDIAKQVERILTTVFNINKRLKGRVDMSMALGLSDIKAQMSGLVYRGFVTG 1200

Query: 1201 NGFKRLGDTLRYLQAIEKRLEKLAVDPHRDRAQMLKVENVQQAWQQWINKLPPARREDED 1260
            NGFKRLGDTLRYLQAIEKRLEKLAVDPHRDRAQMLKVE+VQQAWQQWINKLPPARRED+D
Sbjct: 1201 NGFKRLGDTLRYLQAIEKRLEKLAVDPHRDRAQMLKVESVQQAWQQWINKLPPARREDDD 1260

Query: 1261 VKEIRWMIEELRVSYFAQQLGTPYPISDKRILQAMEQIS 1299
            VKEIRWMIEELRVSYFAQQLGTPYPISDKRILQAM+QI+
Sbjct: 1261 VKEIRWMIEELRVSYFAQQLGTPYPISDKRILQAMDQIT 1299