Pairwise Alignments

Query, 457 a.a., ATP-dependent RNA helicase, specific for 23S rRNA (NCBI) from Escherichia coli BW25113

Subject, 476 a.a., ATP-dependent 23S rRNA helicase DbpA from Variovorax sp. SCN45

 Score =  417 bits (1071), Expect = e-121
 Identities = 230/457 (50%), Positives = 296/457 (64%), Gaps = 12/457 (2%)

Query: 10  LPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASL 69
           L P  L NL +LGY  MTP+QAAALP  L GKD+  QAKTGSGKTAAF L LL  ++A  
Sbjct: 22  LSPQMLANLTQLGYTQMTPIQAAALPPALLGKDLIAQAKTGSGKTAAFALALLANLNARR 81

Query: 70  FQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHAPHIIVAT 129
           F  QA+VLCPTRELADQV  E+RRLAR   N K++TLCGG     Q  SL+H  HI+V T
Sbjct: 82  FAIQAMVLCPTRELADQVTTEIRRLARAEENIKVVTLCGGVALRGQVASLEHGAHIVVGT 141

Query: 130 PGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATWPE 189
           PGR++DHL++  + L ALNTLV+DEADRMLDMGF D I  V R  P  RQTLLFSAT+PE
Sbjct: 142 PGRIMDHLERENLDLSALNTLVLDEADRMLDMGFFDDIVTVARQCPKERQTLLFSATYPE 201

Query: 190 AIAAISGRVQRDPLAIEIDSTDALPPIEQQFYETSSKGKIPLLQRLLSLHQPSSCVVFCN 249
            IA ++ +  ++P  I + +      I Q++Y+     ++  +  LL   +P S + FCN
Sbjct: 202 GIAKLAQQFMKNPEQITVQAQHEGSKIRQRWYQIKDSERLHAVSLLLDHFRPVSTLAFCN 261

Query: 250 TKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKS 309
           TK+ C+ + D L   G SAL+L G+LEQR+RDQ LV+FAN S  VLVATDVAARGLDI  
Sbjct: 262 TKQQCRDLVDVLQAQGFSALALFGELEQRERDQVLVQFANRSCSVLVATDVAARGLDISQ 321

Query: 310 LELVVNFELAWDPEVHVHRIGRTARAGN----SGLAISFCAPEEAQRANIISDMLQIKLN 365
           LE V+N ++  D E+H+HR+GRT R G      GLA++  +  E      I  +   +  
Sbjct: 322 LEAVINVDVTPDSEIHIHRVGRTGRVGQQGAAEGLALNLASMNEMGFVGKIEQLQGRESE 381

Query: 366 WQ-----TPPANSSIATLEAEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGKIAV 420
           W      TP   S    L+  MATL I GG+K K+R GDVLGALTGD G     +GKI V
Sbjct: 382 WHELSELTPGKGS---PLKPPMATLQIVGGRKEKIRAGDVLGALTGDCGYAKDQVGKINV 438

Query: 421 HPAHVYVAVRQAVAHKAWKQLQGGKIKGKTCRVRLLK 457
           +    YVAV +A+A +A ++L  G++KGK+ +VRLL+
Sbjct: 439 NEFSTYVAVDRAIAAEAARKLSSGRVKGKSVKVRLLE 475