Pairwise Alignments

Query, 457 a.a., ATP-dependent RNA helicase, specific for 23S rRNA (NCBI) from Escherichia coli BW25113

Subject, 461 a.a., ATP-dependent RNA helicase DbpA from Pseudomonas fluorescens SBW25

 Score =  474 bits (1219), Expect = e-138
 Identities = 249/457 (54%), Positives = 320/457 (70%), Gaps = 3/457 (0%)

Query: 2   TAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGL 61
           TAF+TL  L  A L NL+ LGY+ MT +QA +LP IL G D+  QAKTGSGKTAAFG+GL
Sbjct: 6   TAFNTLP-LSAAMLANLDSLGYVEMTQIQAQSLPVILKGLDLIAQAKTGSGKTAAFGIGL 64

Query: 62  LQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQH 121
           L  I+   F  QALV+CPTRELADQVA E+RRLAR   N K+LTLCGG   G Q  SL+H
Sbjct: 65  LNPINPRYFGCQALVMCPTRELADQVAKEIRRLARAEDNIKVLTLCGGVSLGPQIASLEH 124

Query: 122 APHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTL 181
             H+IV TPGR+  HL+KG++ LD LNTL++DEADRMLDMGF DAI+D+I   P  RQTL
Sbjct: 125 GAHVIVGTPGRIQQHLRKGSLVLDGLNTLILDEADRMLDMGFYDAIEDIISKTPPRRQTL 184

Query: 182 LFSATWPEAIAAISGRVQRDPLAIEIDSTDALPPIEQQFYETSSKGKIPLLQRLLSLHQP 241
           LFSAT+P +I  ++ +  R P  ++ ++  +   IEQ+FYE S + ++  + ++L+  +P
Sbjct: 185 LFSATYPVSIKQLASKFMRAPQQVKAEAFHSDDQIEQRFYEISPEERMEAVTKVLAHFRP 244

Query: 242 SSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVA 301
           +SCV FC TK+  Q   D L   G SA+ LHGDLEQRDRDQ L  FAN S  VLVATDVA
Sbjct: 245 ASCVAFCFTKQQVQETVDHLTAKGISAVGLHGDLEQRDRDQVLAMFANRSTSVLVATDVA 304

Query: 302 ARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQ 361
           ARGLDI SL++V+N ELA D E+H+HR+GRT RAG +G+AIS  AP EA RA  I  + +
Sbjct: 305 ARGLDIDSLDMVINVELARDSEIHIHRVGRTGRAGETGIAISLVAPSEAHRAQAIEQLQK 364

Query: 362 IKLNWQTPP--ANSSIATLEAEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGKIA 419
             LNW         S   L  +M+TLCI  G+K K+RPGD+LGALTG+ G+ GA +GKIA
Sbjct: 365 SPLNWDQLDNLKPQSGGPLLPQMSTLCIAAGRKDKVRPGDILGALTGEAGIPGAQVGKIA 424

Query: 420 VHPAHVYVAVRQAVAHKAWKQLQGGKIKGKTCRVRLL 456
           +     +VAV + +A +A ++L  GKIKG++ RVR+L
Sbjct: 425 IFDFQAFVAVERGIAKQALQRLNDGKIKGRSLRVRIL 461