Pairwise Alignments

Query, 457 a.a., ATP-dependent RNA helicase, specific for 23S rRNA (NCBI) from Escherichia coli BW25113

Subject, 460 a.a., ATP-dependent RNA helicase DbpA from Serratia liquefaciens MT49

 Score =  592 bits (1526), Expect = e-174
 Identities = 305/457 (66%), Positives = 359/457 (78%), Gaps = 3/457 (0%)

Query: 3   AFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLL 62
           +FS+L  LP  QL NLNELGY  MTPVQAAALPAIL G+DVR +AKTGSGKTAAFG+GLL
Sbjct: 5   SFSSLP-LPAEQLANLNELGYAEMTPVQAAALPAILKGQDVRAKAKTGSGKTAAFGIGLL 63

Query: 63  QQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHA 122
            +I+ S    QAL+LCPTRELADQV+ ELRRLARF  N KILTLCGGQP G Q DSL HA
Sbjct: 64  DKINVSQVAAQALILCPTRELADQVSKELRRLARFTQNIKILTLCGGQPMGPQLDSLVHA 123

Query: 123 PHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLL 182
           PHI+V TPGR+ +HL+K T+ LD L  LV+DEADRMLDMGF+D IDDVI + P  RQTLL
Sbjct: 124 PHIVVGTPGRIQEHLRKKTLVLDELKVLVLDEADRMLDMGFADDIDDVISYTPPQRQTLL 183

Query: 183 FSATWPEAIAAISGRVQRDPLAIEIDSTDALPPIEQQFYETSSKGKIPLLQRLLSLHQPS 242
           FSAT+P  I  IS RVQR+PL +E+D  +    IEQ+FYET+   +  +L   +  +QPS
Sbjct: 184 FSATYPSGIERISARVQREPLNVEVDDGEEQTTIEQRFYETTRDQRPAVLVSAIRHYQPS 243

Query: 243 SCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAA 302
           SCVVFCNTK+DCQ+V +AL   G + L+LHGDLEQRDRDQ LVRFAN S RVLVATDVAA
Sbjct: 244 SCVVFCNTKRDCQSVYEALEARGINVLALHGDLEQRDRDQVLVRFANRSCRVLVATDVAA 303

Query: 303 RGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQI 362
           RGLDIK LELVVN+ELA+DPEVHVHRIGRT RAG SGLAIS C P+E  RA+ I + LQI
Sbjct: 304 RGLDIKELELVVNYELAFDPEVHVHRIGRTGRAGLSGLAISLCTPQEMTRAHAIEEYLQI 363

Query: 363 KLNWQ--TPPANSSIATLEAEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGKIAV 420
           ++NW   +  + +   TLEAEM TLCIDGG+KAK+RPGD+LGALTG+ GL  A++GKI +
Sbjct: 364 RVNWAPVSELSGAGNTTLEAEMVTLCIDGGRKAKIRPGDILGALTGEAGLTAAEVGKIDM 423

Query: 421 HPAHVYVAVRQAVAHKAWKQLQGGKIKGKTCRVRLLK 457
            P H YVA+R+A A KA +QLQ GKIKGK C+VRLLK
Sbjct: 424 FPVHAYVAIRKASARKALQQLQQGKIKGKNCKVRLLK 460