Pairwise Alignments

Query, 457 a.a., ATP-dependent RNA helicase, specific for 23S rRNA (NCBI) from Escherichia coli BW25113

Subject, 655 a.a., DEAD/DEAH family ATP-dependent RNA helicase from Serratia liquefaciens MT49

 Score =  279 bits (714), Expect = 2e-79
 Identities = 154/364 (42%), Positives = 222/364 (60%), Gaps = 2/364 (0%)

Query: 2   TAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGL 61
           T+F+ L +  P  ++ L +LGY   +P+QA  +P +L G+DV   A+TGSGKTAAF L L
Sbjct: 7   TSFADLGLSAPI-ISALTDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPL 65

Query: 62  LQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQH 121
           L  +DASL   Q LVL PTRELA QVA  +   ++ +    ++ L GGQ + +Q  +L+ 
Sbjct: 66  LHNLDASLKAPQILVLAPTRELAVQVAEAMTDFSKHMHGVNVVALYGGQRYDVQLRALRQ 125

Query: 122 APHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTL 181
            P I+V TPGRLLDHL++GT++L  L+ LV+DEAD ML MGF + ++ ++   PA  QT 
Sbjct: 126 GPQIVVGTPGRLLDHLKRGTLNLSNLSGLVLDEADEMLRMGFIEDVETIMAEIPAEHQTA 185

Query: 182 LFSATWPEAIAAISGRVQRDPLAIEIDST-DALPPIEQQFYETSSKGKIPLLQRLLSLHQ 240
           LFSAT PEAI  I+ R  ++P  + I S+    P I Q ++      K   L R L    
Sbjct: 186 LFSATMPEAIRRITRRFMKEPQEVRIQSSITTRPDISQSYWTVHGMRKNEALVRFLEAED 245

Query: 241 PSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDV 300
             + ++F  TK     V +AL   G S+ +L+GD+ Q  R+QTL R  +G   +L+ATDV
Sbjct: 246 FDAAIIFVRTKNATLEVAEALERSGYSSAALNGDMNQALREQTLERLKDGRLDILIATDV 305

Query: 301 AARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDML 360
           AARGLD++ + LVVN+++  D E +VHRIGRT RAG +G A+ F    E +    I   +
Sbjct: 306 AARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTM 365

Query: 361 QIKL 364
           ++ +
Sbjct: 366 KLTI 369