Pairwise Alignments

Query, 457 a.a., ATP-dependent RNA helicase, specific for 23S rRNA (NCBI) from Escherichia coli BW25113

Subject, 629 a.a., ATP-dependent RNA helicase DeaD from Escherichia coli HS(pFamp)R (ATCC 700891)

 Score =  275 bits (704), Expect = 2e-78
 Identities = 153/364 (42%), Positives = 218/364 (59%), Gaps = 2/364 (0%)

Query: 2   TAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGL 61
           T F+ L +  P  L  LN+LGY   +P+QA  +P +L G+DV   A+TGSGKTAAF L L
Sbjct: 6   TTFADLGLKAPI-LEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPL 64

Query: 62  LQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQH 121
           LQ +D  L   Q LVL PTRELA QVA  +   ++ +    ++ L GGQ + +Q  +L+ 
Sbjct: 65  LQNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQ 124

Query: 122 APHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTL 181
            P I+V TPGRLLDHL++GT+ L  L+ LV+DEAD ML MGF + ++ ++   P   QT 
Sbjct: 125 GPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTA 184

Query: 182 LFSATWPEAIAAISGRVQRDPLAIEIDST-DALPPIEQQFYETSSKGKIPLLQRLLSLHQ 240
           LFSAT PEAI  I+ R  ++P  + I S+    P I Q ++      K   L R L    
Sbjct: 185 LFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAED 244

Query: 241 PSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDV 300
             + ++F  TK     V +AL   G ++ +L+GD+ Q  R+QTL R  +G   +L+ATDV
Sbjct: 245 FDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDV 304

Query: 301 AARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDML 360
           AARGLD++ + LVVN+++  D E +VHRIGRT RAG +G A+ F    E +    I   +
Sbjct: 305 AARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTM 364

Query: 361 QIKL 364
           ++ +
Sbjct: 365 KLTI 368