Pairwise Alignments

Query, 547 a.a., predicted antimicrobial peptide transporter subunit (NCBI) from Escherichia coli BW25113

Subject, 533 a.a., peptide ABC transporter substrate-binding protein from Pseudomonas simiae WCS417

 Score =  365 bits (937), Expect = e-105
 Identities = 198/541 (36%), Positives = 299/541 (55%), Gaps = 12/541 (2%)

Query: 2   RQVLSSLLVIAGLVSGQAIAAPESPPHADIRDSGFVYCVSGQVNTFNPSKASSGLIVDTL 61
           R  L  LL+ AGL++   +A   S           VYC       F+PS+ +SG   D  
Sbjct: 3   RIALKPLLLAAGLLACMPLAQAAST---------LVYCSEASPAGFDPSQYTSGTDFDAS 53

Query: 62  AAQFYDRLLDVDPYTYRLMPELAESWEVLDNGATYRFHLRRDVPFQKTDWFTPTRKMNAD 121
           A   ++RL         + P LA SW++  +G TY FHLR  V F  TD+F+PTR  NAD
Sbjct: 54  AETVFNRLTQFKRGGTEVEPGLATSWDISQDGLTYTFHLRDGVKFHTTDFFSPTRDFNAD 113

Query: 122 DVVFTFQRIFDRNNPWHNVNGSNFPYFDSLQFADNVKSVRKLDNHTVEFRLAQPDASFLW 181
           DV+FTF R+ D  +P+     S  PYF  +     +KSV KLD+HTV F L   DASF+ 
Sbjct: 114 DVLFTFNRLLDAQSPFRQAYPSESPYFTDMGLNTTIKSVDKLDDHTVRFNLNNVDASFVQ 173

Query: 182 HLATHYASVMSAEYARKLEKEDRQEQLDRQPVGTGPYQLSEYRAGQFIRLQRHDDFWRGK 241
           +LA  +ASV SAEYA +L K+ + E+++++PVGTGP+    Y+    IR   +  +W+ +
Sbjct: 174 NLAMSFASVQSAEYAAQLLKQGKAEEINQKPVGTGPFVFKRYQKDSQIRYVANKQYWKPE 233

Query: 242 PL-MPQVVVDLGSGGTGRLSKLLTGECDVLAWPAASQLSILRDDPRLRLTLRPGMNVAYL 300
            + +  +V  +      RL KL  GEC V  +P  + + +++ DP L +  + G N+ +L
Sbjct: 234 DVKLDNLVFAITPDAASRLQKLKAGECQVSGYPRPADIEVMKQDPNLHVLQQAGFNLGFL 293

Query: 301 AFNTAKPPLNNPAVRHALALAINNQRLMQSIYYGTAETAASILPRASWAYDNEAKITEYN 360
           A+N   PPL+   VR AL +AI+   +++++Y    + A + LP A W+YD   K   Y+
Sbjct: 294 AYNVTHPPLDQLKVRQALDMAIDKPAIIKAVYQSAGQLAQNALPPAQWSYDPTIKDAPYD 353

Query: 361 PAKSREQLKSLGL-ENLTLKLWVPTRSQAWNPSPLKTAELIQADMAQVGVKVVIVPVEGR 419
           P K++  LK  G+    T+ LW  T  +A NP+   +A++IQ D  +VG+K  IV  E  
Sbjct: 354 PTKAKALLKEAGVAPGTTVNLWAMTVQRASNPNARMSAQMIQQDWEKVGIKANIVSYEWG 413

Query: 420 FQEARLMDMSHDLTLSGWATDSNDPDSFFRPLLSCAAIHSQTNLAHWCDPKFDSVLRKAL 479
               R  +  HD  + GW  D+ DPD++   L SCAA+   +N A WC+P +D ++++A 
Sbjct: 414 EYIKRAKNGEHDAMIYGWTGDNGDPDNWLGVLYSCAAVKG-SNYAKWCNPAYDKLVQQAK 472

Query: 480 SSQQLAARIEAYDEAQSILAQELPILPLASSLRLQAYRYDIKGLVLSPFGNASFAGVYRE 539
            S     RI+ Y +AQ IL +++PI P+A+S   Q  R ++K   +SPFG   F GV  +
Sbjct: 473 VSNDREQRIKWYQQAQKILKEQVPITPIANSTVFQPLRKEVKDFKISPFGLTPFYGVSLD 532

Query: 540 K 540
           K
Sbjct: 533 K 533