Pairwise Alignments

Query, 547 a.a., predicted antimicrobial peptide transporter subunit (NCBI) from Escherichia coli BW25113

Subject, 542 a.a., peptide ABC transporter substrate-binding protein from Pseudomonas simiae WCS417

 Score =  333 bits (853), Expect = 1e-95
 Identities = 179/546 (32%), Positives = 298/546 (54%), Gaps = 20/546 (3%)

Query: 1   MRQVLSSLLVIAGLVSGQAIAAPESPPHADIRDSGFVYCVSGQVNTFNPSKASSGLIVDT 60
           ++  +  L+V AGL++    AAP +    ++     V+C  G    F+P + ++G   D 
Sbjct: 2   LKHAVIPLIVSAGLMA----AAPFAQAATNL-----VFCSEGSPAGFDPGQYTTGTDFDA 52

Query: 61  LAAQFYDRLLDVDPYTYRLMPELAESWEVLDNGATYRFHLRRDVPFQKTDWFTPTRKMNA 120
            A   ++RL   +     ++P LA SW+V  +G TY FHLR  V F  T +F PTR  NA
Sbjct: 53  SAETMFNRLTQFERGGTAVIPGLATSWDVSPDGLTYTFHLRDGVKFHTTSYFKPTRTFNA 112

Query: 121 DDVVFTFQRIFDRNNPWHNVNGSNFPYFDSLQFADNVKSVRKLDNHTVEFRLAQPDASFL 180
           DDV+FTF R+ ++++P+     + FPYF  +    N+K++ K+D HTV+F L   DA+F+
Sbjct: 113 DDVLFTFNRMINKDDPFRKAYPTEFPYFTDMGMDTNIKNIEKVDEHTVKFTLGTVDAAFI 172

Query: 181 WHLATHYASVMSAEYARKLEKEDRQEQLDRQPVGTGPYQLSEYRAGQFIRLQRHDDFWRG 240
            +LA  +AS+ SAEYA +L KE +   ++++P+GTGP+    Y+    IR   + D+W+ 
Sbjct: 173 QNLAMSFASIQSAEYAAQLLKEGKPADINQKPIGTGPFVFKSYQKDSNIRYTGNKDYWKP 232

Query: 241 KPL-MPQVVVDLGSGGTGRLSKLLTGECDVLAWPAASQLSILRDDPRLRLTLRPGMNVAY 299
           + + +  ++  + +  + R+ KL   EC +  +P  + L  L DD  L+L  + G N+ Y
Sbjct: 233 EDVKIDNLIFAITTDPSVRIQKLKKNECQITLFPRPADLKALGDDKDLKLPHQAGFNLGY 292

Query: 300 LAFNTAKP--------PLNNPAVRHALALAINNQRLMQSIYYGTAETAASILPRASWAYD 351
           +A+N            PL +  VR AL +++N Q+++ S+Y G  + A + +P   W+YD
Sbjct: 293 IAYNVMDKVKGSDQPNPLADLRVRQALDMSVNKQQIIDSVYQGAGQLAVNAMPPTQWSYD 352

Query: 352 NEAKITEYNPAKSREQLKSLGL-ENLTLKLWVPTRSQAWNPSPLKTAELIQADMAQVGVK 410
              K  +Y+P K++  LK  G+ E   + LW     + +NP+    AE++Q D  ++G+ 
Sbjct: 353 TTIKDAKYDPEKAKSLLKEAGIKEGTEIVLWAMPVQRPYNPNAKLMAEMLQNDWKKIGLN 412

Query: 411 VVIVPVEGRFQEARLMDMSHDLTLSGWATDSNDPDSFFRPLLSCAAIHSQTNLAHWCDPK 470
           V I   E      R     +   + GW+ D+ DPD++   L  C ++ S  N + WCD K
Sbjct: 413 VKITSYEWGEYIKRSKGGENQAMIIGWSGDNGDPDNWLNVLFGCDSL-SGNNFSKWCDKK 471

Query: 471 FDSVLRKALSSQQLAARIEAYDEAQSILAQELPILPLASSLRLQAYRYDIKGLVLSPFGN 530
           FD ++++A ++  +A R E Y +AQ IL   +P+ P+A S   Q  R  ++   +SPFG 
Sbjct: 472 FDGIVKEAKATSDVAKRTELYKQAQHILKDAVPMTPIAHSTVYQPMRSTVQDFKISPFGL 531

Query: 531 ASFAGV 536
            SF GV
Sbjct: 532 NSFYGV 537