Pairwise Alignments

Query, 547 a.a., predicted antimicrobial peptide transporter subunit (NCBI) from Escherichia coli BW25113

Subject, 526 a.a., Dipeptide-binding ABC transporter, periplasmic substrate-binding component (TC 3.A.1.5.2) from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  369 bits (947), Expect = e-106
 Identities = 182/509 (35%), Positives = 292/509 (57%), Gaps = 1/509 (0%)

Query: 29  ADIRDSGFVYCVSGQVNTFNPSKASSGLIVDTLAAQFYDRLLDVDPYTYRLMPELAESWE 88
           A ++    VYC  G    FNP   +SG   D  +   Y+RL++    T  ++P LAE W+
Sbjct: 15  ASVQAKTLVYCSEGSPEGFNPQLFTSGTTYDASSVPIYNRLVEFKTGTTEVIPGLAEKWD 74

Query: 89  VLDNGATYRFHLRRDVPFQKTDWFTPTRKMNADDVVFTFQRIFDRNNPWHNVNGSNFPYF 148
           + ++G TY FHLR+ V +Q +  F PTR++NADDVVF+F R  +  NP+H V+G ++ YF
Sbjct: 75  ISEDGKTYTFHLRKGVKWQSSKDFKPTRELNADDVVFSFDRQKNEQNPYHKVSGGSYEYF 134

Query: 149 DSLQFADNVKSVRKLDNHTVEFRLAQPDASFLWHLATHYASVMSAEYARKLEKEDRQEQL 208
           + +   D +  V+K+D+HTV+F L +P+A FL  LA  +AS++S EYA  + K    E++
Sbjct: 135 EGMGLPDLISEVKKVDDHTVQFVLTRPEAPFLADLAMDFASILSKEYADNMLKAGTPEKV 194

Query: 209 DRQPVGTGPYQLSEYRAGQFIRLQRHDDFWRGKPLMPQVVVDLGSGGTGRLSKLLTGECD 268
           D  PVGTGP+QL +Y+    I  +  D +W  KP + ++V  +    + R +KL   EC 
Sbjct: 195 DLNPVGTGPFQLVQYQKDSRILYKAFDGYWGTKPQIDRLVFSITPDASVRYAKLQKNECQ 254

Query: 269 VLAWPAASQLSILRDDPRLRLTLRPGMNVAYLAFNTAKPPLNNPAVRHALALAINNQRLM 328
           V+ +P  + ++ +++D  + L  + G+NV YL++N  K PL++  VR AL  A+N + ++
Sbjct: 255 VMPYPNPADIARMKEDKNINLMEQAGLNVGYLSYNVQKKPLDDVKVRQALTYAVNKEAII 314

Query: 329 QSIYYGTAETAASILPRASWAYDNEAKITEYNPAKSREQLKSLGLE-NLTLKLWVPTRSQ 387
           +++Y G    A +++P   W Y+++ K   Y+P K++  LK  GLE   T+ LW     +
Sbjct: 315 KAVYQGAGVAAKNLIPPTMWGYNDDIKDYGYDPEKAKALLKEAGLEKGFTIDLWAMPVQR 374

Query: 388 AWNPSPLKTAELIQADMAQVGVKVVIVPVEGRFQEARLMDMSHDLTLSGWATDSNDPDSF 447
            +NP+  + AE+IQAD A++GV+  IV  E      R  D  H   + GW  D+ DPD+F
Sbjct: 375 PYNPNARRMAEMIQADWAKIGVQAKIVTYEWGEYLKRAKDGEHQTVMMGWTGDNGDPDNF 434

Query: 448 FRPLLSCAAIHSQTNLAHWCDPKFDSVLRKALSSQQLAARIEAYDEAQSILAQELPILPL 507
           F  L SC A    +N + WC   F+ +++ A ++     RIE Y +AQ ++  + P L +
Sbjct: 435 FATLFSCDAAQQGSNYSKWCYKPFEDLIQPARATDDHNKRIELYKQAQVVMHDQAPALII 494

Query: 508 ASSLRLQAYRYDIKGLVLSPFGNASFAGV 536
           A S   +  R ++KG V+ P G   F  V
Sbjct: 495 AHSTVYEPVRKEVKGYVVDPLGKHHFENV 523