Pairwise Alignments

Query, 306 a.a., oligopeptide permease ABC transporter membrane protein (NCBI) from Escherichia coli BW25113

Subject, 336 a.a., dipeptide ABC transporter - putative membrane subunit from Pseudomonas putida KT2440

 Score =  208 bits (530), Expect = 1e-58
 Identities = 125/335 (37%), Positives = 187/335 (55%), Gaps = 30/335 (8%)

Query: 1   MLKFILRRCLEAIPTLFILITISFFMMRLAPGSP---FTGERTLPPEVMANIEAKYHLND 57
           ML FI RR    IPT F +  ++F ++RL PG P     GER + PE+ A    +  LN 
Sbjct: 1   MLSFIARRLGLLIPTFFGITLLTFALIRLIPGDPVEVMMGERRVDPEMHAQAMERLGLNK 60

Query: 58  PIMTQYFSYLKQLAHGDFGPSFKYKDYSVNDLVASSFPVSAKLGAAAFFLAVILGVSAGV 117
           P+  QY  Y+ +LA GD G S + ++ SV     + FP + +L  AA   A ++G+ AGV
Sbjct: 61  PLPVQYLDYVGKLAQGDLGESLRTRE-SVWREFLTLFPATLELAFAALLFAGVVGLLAGV 119

Query: 118 IAALKQNTKWDYTVMGLAMTGVVIPSFVVAPLLVMIFAIILHWLPGGGW----------- 166
           IAALK+ + +D+ VMG+++ G  +P F    +L+M F++ L W P  G            
Sbjct: 120 IAALKRGSLFDHGVMGISLAGYSMPIFWWGLILIMFFSVSLGWTPVSGRIDLLYDIEPKT 179

Query: 167 -----------NGGALK----FMILPMVALSLAYIASIARITRGSMIEVLHSNFIRTARA 211
                        GA K     +ILP + L    +A IAR+TR SM+EVL  ++IRTARA
Sbjct: 180 GFMLIDTLLSDEEGAFKDAVMHLILPAIVLGTIPLAVIARMTRSSMLEVLREDYIRTARA 239

Query: 212 KGLPMRRIILRHALKPALLPVLSYMGPAFVGIITGSMVIETIYGLPGIGQLFVNGALNRD 271
           KGL   R++  H L+ AL+PVL+  G     ++ G+++ ETI+  PGIG+  +     RD
Sbjct: 240 KGLSPARVVFVHGLRNALIPVLTVFGLQVGTLLAGAVLTETIFSWPGIGKWLIEAIGARD 299

Query: 272 YSLVLSLTILVGALTILFNAIVDVLYAVIDPKIRY 306
           Y +V +  +L+  L IL N +VD+LY + +P+IR+
Sbjct: 300 YPVVQNGILLIACLVILVNFVVDILYGLANPRIRH 334