Pairwise Alignments

Query, 578 a.a., orf, hypothetical protein (VIMSS) from Escherichia coli BW25113

Subject, 419 a.a., sodium:proton antiporter from Pseudomonas simiae WCS417

 Score = 86.3 bits (212), Expect = 2e-21
 Identities = 93/350 (26%), Positives = 163/350 (46%), Gaps = 29/350 (8%)

Query: 60  FAYMVSNLALAIILLDGGMRTQASSFRVALGPALSLATLGVLITSGLTGMMAAWLF---- 115
           F  ++ N  L+ +L  G +    +  R    P   LAT GVLI + + G +A ++F    
Sbjct: 66  FGDLLMNWMLSFLLFAGALHVNLNDLRSYRWPIGLLATFGVLIATVVIGSLAYYIFALFG 125

Query: 116 -NLDLIEGLLIGAIVGSTDAAAVFSLLGGKGLNERVGSTLEIESGSNDPMAVFLTITLIA 174
            ++  +  LL GA++  TD  AV  +L     ++ + +T+  ES  ND  AV +   L+ 
Sbjct: 126 WHVSFLYCLLFGALISPTDPIAVLGVLRTANASKPLKTTIVGESLFNDGTAVVVFTVLLG 185

Query: 175 MIQHHES----NISWMFIVDILQQFGLGIVIGLGGGYLLLQMINRIALPAGLYPLLALSG 230
           + Q  E+      + +F  + +     G +IG    YL+++ I +  +   L   L + G
Sbjct: 186 IAQLGETPTVGATAMLFAHEAIGGVAFGGLIGY-LVYLMIKSIEQHQIEVMLTLALVIGG 244

Query: 231 GILIFSLTTALEGSGILAVYLCGFLLGN--RPIRNRYGILQNFDG----LAWLAQIAMFL 284
                ++ T L  S  +A+ + G ++GN  R +       +  DG    L  +    +F 
Sbjct: 245 S----AMATELHVSAPIAMVVAGLIIGNLGRKLAMNDMTRRYLDGFWELLDDMLNALLFA 300

Query: 285 VLG--LLVNPSDLLPIAIPALILSAWMIFFARPLSVFAGLLPFRGFNLRER---VFISWV 339
           ++G  LL+ P + L +   +L+  A  I  +R L+V   +L  R +    R     ++W 
Sbjct: 301 LIGMELLLLPFNWLHVLAASLLAVA--ILLSRLLTVAPAILLLRRWRTVPRGTIRILTWG 358

Query: 340 GLRGAVPIILAVFPMMAGLENARLFFNVAFFVVLVSLLLQGTSLSWAAKK 389
           GLRG V + LA+  +  G E   L  ++ + VVL S+LLQG S+    K+
Sbjct: 359 GLRGGVSVALAL-ALPLGPER-DLLLSITYIVVLSSILLQGLSIGKLVKR 406