Pairwise Alignments

Query, 319 a.a., 23S rRNA pseudouridylate synthase (NCBI) from Escherichia coli BW25113

Subject, 330 a.a., RluA family pseudouridine synthase from Magnetospirillum magneticum AMB-1

 Score =  176 bits (445), Expect = 9e-49
 Identities = 115/312 (36%), Positives = 176/312 (56%), Gaps = 18/312 (5%)

Query: 8   VKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVR 67
           V+ + +  +EA  R+D + +     V   ++ + LR G VRV+ KR K   +L+AG  +R
Sbjct: 4   VQTLTVAEEEAEIRLDRWFKRHFPSVGHGLLEKWLRAGNVRVDGKRAKSNQRLDAGQIIR 63

Query: 68  IPPVRVAEREEEAVSPHL--QKVAA-LADVILYEDDHILVLNKPSGTAVHGGSGLSFGVI 124
           +PP+  AE     V P    +K+A  L D +LY DD ++ LNKP G AV GG+G++   +
Sbjct: 64  VPPLPTAEAPPREVRPAPVDEKIARMLQDAVLYMDDEVIALNKPPGLAVQGGTGMADKHL 123

Query: 125 EG-LRALRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQ 183
           +  L AL  +    +LVHRLD+DTSGVLL+ +  +A   L    + +  +K Y ALV G 
Sbjct: 124 DAWLDALCFDGGRPKLVHRLDKDTSGVLLLGRTANATAKLAAAFKSRSARKCYWALVAGV 183

Query: 184 WQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCS-----PVT 238
            +     + APL K   ++GE++    ++GK + T ++V +    ATL R +     P T
Sbjct: 184 PRYPQGRIDAPLAKLPGKAGEKVAVDKEDGKHAVTYYRVVD----ATLKRAAWLELEPRT 239

Query: 239 GRTHQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNR-LFLHAAALKFTHPGTGEV 297
           GRTHQ+R H    G PI  D +YG ++    L E GTG++R L LHA A++  HP TG+V
Sbjct: 240 GRTHQLRAHCLLLGTPIMGDGKYGGQD---ALVE-GTGVSRKLHLHARAVRLPHPRTGKV 295

Query: 298 MRIEAPMDEGLK 309
           + + AP+   +K
Sbjct: 296 LEVVAPLPPHIK 307