Pairwise Alignments

Query, 319 a.a., 23S rRNA pseudouridylate synthase (NCBI) from Escherichia coli BW25113

Subject, 316 a.a., ribosomal large subunit pseudouridine synthase C (EC 5.4.99.24) from Kangiella aquimarina DSM 16071

 Score =  347 bits (891), Expect = e-100
 Identities = 183/311 (58%), Positives = 223/311 (71%), Gaps = 2/311 (0%)

Query: 6   PSVKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDE 65
           P V+ V +  +EAGQRIDNFL  +LKGVPKS IY++LRKGEVRVNK R+K EYK+E GD 
Sbjct: 7   PKVQFVEVQTEEAGQRIDNFLLKKLKGVPKSRIYKMLRKGEVRVNKGRVKAEYKIEEGDS 66

Query: 66  VRIPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIE 125
           VRIPPV+    E E V  +L  V  L + ILYED  ++VLNKP G AVHGGSG+SFGVIE
Sbjct: 67  VRIPPVKTTNTETE-VPVNLNIVQDLENAILYEDKRLIVLNKPHGMAVHGGSGMSFGVIE 125

Query: 126 GLRALRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQ 185
            LRALRPEA FLELVHRLDRDTSG LL+AKKRS LR LHEQL++K M K Y ALV G+W 
Sbjct: 126 ALRALRPEAPFLELVHRLDRDTSGCLLIAKKRSTLRFLHEQLQKKLMSKQYWALVEGKWP 185

Query: 186 SHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGRTHQIR 245
           + +K +  PL K+ L+SGERIVRV++ GKPS T F V E +   TLV   PVTGRTHQIR
Sbjct: 186 AKLKHIDYPLAKHHLKSGERIVRVTEGGKPSLTSFSVVENFKDFTLVSAEPVTGRTHQIR 245

Query: 246 VHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIEAPMD 305
           VH Q AGHP+  D +YG+ E   +  + G    RLFLHA +L F      + +++EAP+ 
Sbjct: 246 VHAQQAGHPLVGDPKYGNDEITERFKQQGLS-GRLFLHAYSLTFKVTPEDKAIKVEAPLP 304

Query: 306 EGLKRCLQKLR 316
           E L++ L+ LR
Sbjct: 305 EDLQKMLEYLR 315